-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_6470270-6651510

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1298-T1
Valid prediction for snap_scaffold_8-snap.1304-T1
Valid prediction for Augustus_model.g13251.t1
Valid prediction for snap_scaffold_8-snap.1296-T1
Valid prediction for snap_scaffold_8-snap.1290-T1
Valid prediction for GlimmerHMM_glimmerT_19925-T1
Valid prediction for snap_scaffold_8-snap.1274-T1
Valid prediction for GlimmerHMM_glimmerT_19907-T1
Valid prediction for Augustus_model.g13261.t1
Valid prediction for snap_scaffold_8-snap.1293-T1
Valid prediction for GlimmerHMM_glimmerT_19911-T1
Valid prediction for GlimmerHMM_glimmerT_19915-T1
Valid prediction for Augustus_model.g13260.t1
Valid prediction for Augustus_model.g13253.t1
Valid prediction for GlimmerHMM_glimmerT_19923-T1
Valid prediction for snap_scaffold_8-snap.1289-T1
Valid prediction for snap_scaffold_8-snap.1275-T1
Valid prediction for snap_scaffold_8-snap.1272-T1
Valid prediction for Augustus_model.g13249.t1
Valid prediction for GlimmerHMM_glimmerT_19921-T1
Valid prediction for snap_scaffold_8-snap.1297-T1
Valid prediction for Augustus_model.g13248.t1
Valid prediction for GlimmerHMM_glimmerT_19917-T1
Valid prediction for GlimmerHMM_glimmerT_19908-T1
Valid prediction for snap_scaffold_8-snap.1278-T1
Valid prediction for Augustus_model.g13256.t1
Valid prediction for snap_scaffold_8-snap.1303-T1
Valid prediction for GlimmerHMM_glimmerT_19912-T1
Valid prediction for snap_scaffold_8-snap.1281-T1
Valid prediction for GlimmerHMM_glimmerT_19924-T1
Valid prediction for snap_scaffold_8-snap.1302-T1
Valid prediction for Augustus_model.g13264.t1
Valid prediction for Augustus_model.g13258.t1
Valid prediction for snap_scaffold_8-snap.1301-T1
Valid prediction for snap_scaffold_8-snap.1292-T1
Valid prediction for Augustus_model.g13265.t1
Valid prediction for GlimmerHMM_glimmerT_19926-T1
Valid prediction for Augustus_model.g13263.t1
Valid prediction for snap_scaffold_8-snap.1279-T1
Valid prediction for snap_scaffold_8-snap.1305-T1
Valid prediction for Augustus_model.g13262.t1
Valid prediction for GlimmerHMM_glimmerT_19920-T1
Valid prediction for GlimmerHMM_glimmerT_19927-T1
Valid prediction for snap_scaffold_8-snap.1307-T1
Valid prediction for snap_scaffold_8-snap.1299-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.1291-T1
Valid prediction for snap_scaffold_8-snap.1288-T1
Valid prediction for snap_scaffold_8-snap.1276-T1
Valid prediction for snap_scaffold_8-snap.1270-T1
Valid prediction for GlimmerHMM_glimmerT_19910-T1
Valid prediction for snap_scaffold_8-snap.1285-T1
Valid prediction for GlimmerHMM_glimmerT_19906-T1
Valid prediction for snap_scaffold_8-snap.1273-T1
Valid prediction for GlimmerHMM_glimmerT_19913-T1
Valid prediction for GlimmerHMM_glimmerT_19918-T1
Valid prediction for snap_scaffold_8-snap.1287-T1
Valid prediction for Augustus_model.g13259.t1
Valid prediction for GlimmerHMM_glimmerT_19914-T1
Valid prediction for snap_scaffold_8-snap.1308-T1
Valid prediction for Augustus_model.g13266.t1
Valid prediction for GlimmerHMM_glimmerT_19916-T1
Valid prediction for GlimmerHMM_glimmerT_19909-T1
Valid prediction for snap_scaffold_8-snap.1309-T1
Valid prediction for snap_scaffold_8-snap.1295-T1
Valid prediction for GlimmerHMM_glimmerT_19922-T1
Valid prediction for snap_scaffold_8-snap.1280-T1
Valid prediction for snap_scaffold_8-snap.1300-T1
Valid prediction for GlimmerHMM_glimmerT_19905-T1
Valid prediction for Augustus_model.g13257.t1
Valid prediction for Augustus_model.g13255.t1
Valid prediction for snap_scaffold_8-snap.1284-T1
Valid prediction for snap_scaffold_8-snap.1271-T1
Valid prediction for snap_scaffold_8-snap.1306-T1
Valid prediction for snap_scaffold_8-snap.1294-T1
Valid prediction for Augustus_model.g13250.t1
Valid prediction for snap_scaffold_8-snap.1282-T1
Valid prediction for Augustus_model.g13254.t1
Valid prediction for snap_scaffold_8-snap.1277-T1
Valid prediction for snap_scaffold_8-snap.1283-T1
Valid prediction for GlimmerHMM_glimmerT_19919-T1
Valid prediction for Augustus_model.g13252.t1
Valid prediction for snap_scaffold_8-snap.1286-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10525, rend_intergenic: 6352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25563, rend_intergenic: 20844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34290, rend_intergenic: 30858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51289, rend_intergenic: 40118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96644, rend_intergenic: 94381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137993, rend_intergenic: 135569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156464, rend_intergenic: 153693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157216, rend_intergenic: 156935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 181241
-exon list size: 235


building trellis

0.4    
0.8    
1.3    
1.7    
2.1    
2.5    
3.0    
3.4    
3.8    
4.2    
4.6    
5.1    
5.5    
5.9    
6.3    
6.8    
7.2    
7.6    
8.0    
8.4    
8.9    
9.3    
9.7    
10.1    
10.5    
11.0    
11.4    
11.8    
12.2    
12.7    
13.1    
13.5    
13.9    
14.3    
14.8    
15.2    
15.6    
16.0    
16.5    
16.9    
17.3    
17.7    
18.1    
18.6    
19.0    
19.4    
19.8    
20.3    
20.7    
21.1    
21.5    
21.9    
22.4    
22.8    
23.2    
23.6    
24.1    
24.5    
24.9    
25.3    
25.7    
26.2    
26.6    
27.0    
27.4    
27.8    
28.3    
28.7    
29.1    
29.5    
30.0    
30.4    
30.8    
31.2    
31.6    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.4    
35.9    
36.3    
36.7    
37.1    
37.6    
38.0    
38.4    
38.8    
39.2    
39.7    
40.1    
40.5    
40.9    
41.4    
41.8    
42.2    
42.6    
43.0    
43.5    
43.9    
44.3    
44.7    
45.1    
45.6    
46.0    
46.4    
46.8    
47.3    
47.7    
48.1    
48.5    
48.9    
49.4    
49.8    
50.2    
50.6    
51.1    
51.5    
51.9    
52.3    
52.7    
53.2    
53.6    
54.0    
54.4    
54.9    
55.3    
55.7    
56.1    
56.5    
57.0    
57.4    
57.8    
58.2    
58.6    
59.1    
59.5    
59.9    
60.3    
60.8    
61.2    
61.6    
62.0    
62.4    
62.9    
63.3    
63.7    
64.1    
64.6    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.4    
68.8    
69.2    
69.6    
70.0    
70.5    
70.9    
71.3    
71.7    
72.2    
72.6    
73.0    
73.4    
73.8    
74.3    
74.7    
75.1    
75.5    
75.9    
76.4    
76.8    
77.2    
77.6    
78.1    
78.5    
78.9    
79.3    
79.7    
80.2    
80.6    
81.0    
81.4    
81.9    
82.3    
82.7    
83.1    
83.5    
84.0    
84.4    
84.8    
85.2    
85.7    
86.1    
86.5    
86.9    
87.3    
87.8    
88.2    
88.6    
89.0    
89.5    
89.9    
90.3    
90.7    
91.1    
91.6    
92.0    
92.4    
92.8    
93.2    
93.7    
94.1    
94.5    
94.9    
95.4    
95.8    
96.2    
96.6    
97.0    
97.5    
97.9    
98.3    
98.7    
99.2    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 10525, rend_intergenic: 6352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25563, rend_intergenic: 20844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34290, rend_intergenic: 30858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51289, rend_intergenic: 40118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96644, rend_intergenic: 94381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137993, rend_intergenic: 135569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156464, rend_intergenic: 153693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157216, rend_intergenic: 156935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 168913 - 181241
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 170857 - 181241
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support