-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_5270514-5439467

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19771-T1
Valid prediction for GlimmerHMM_glimmerT_19764-T1
Valid prediction for snap_scaffold_8-snap.1065-T1
Valid prediction for snap_scaffold_8-snap.1068-T1
Valid prediction for GlimmerHMM_glimmerT_19783-T1
Valid prediction for GlimmerHMM_glimmerT_19774-T1
Valid prediction for GlimmerHMM_glimmerT_19781-T1
Valid prediction for GlimmerHMM_glimmerT_19765-T1
Valid prediction for Augustus_model.g13135.t1
Valid prediction for snap_scaffold_8-snap.1070-T1
Valid prediction for GlimmerHMM_glimmerT_19777-T1
Valid prediction for GlimmerHMM_glimmerT_19763-T1
Valid prediction for HiQ_model.g13143.t1
Valid prediction for snap_scaffold_8-snap.1077-T1
Valid prediction for CodingQuarry_transcript_59653-T1
Valid prediction for snap_scaffold_8-snap.1079-T1
Valid prediction for GlimmerHMM_glimmerT_19772-T1
Valid prediction for snap_scaffold_8-snap.1060-T1
Valid prediction for snap_scaffold_8-snap.1052-T1
Valid prediction for Augustus_model.g13139.t1
Valid prediction for Augustus_model.g13133.t1
Valid prediction for snap_scaffold_8-snap.1053-T1
Valid prediction for CodingQuarry_transcript_59654-T1
Valid prediction for Augustus_model.g13138.t1
Valid prediction for GlimmerHMM_glimmerT_19759-T1
Valid prediction for GlimmerHMM_glimmerT_19768-T1
Valid prediction for snap_scaffold_8-snap.1056-T1
Valid prediction for GlimmerHMM_glimmerT_19762-T1
Valid prediction for pasa_asmbl_52884.p1
Valid prediction for GlimmerHMM_glimmerT_19758-T1
Valid prediction for GlimmerHMM_glimmerT_19778-T1
Valid prediction for snap_scaffold_8-snap.1064-T1
Valid prediction for Augustus_model.g13131.t1
Valid prediction for snap_scaffold_8-snap.1076-T1
Valid prediction for snap_scaffold_8-snap.1078-T1
Valid prediction for GlimmerHMM_glimmerT_19760-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g13137.t1
Valid prediction for snap_scaffold_8-snap.1075-T1
Valid prediction for GlimmerHMM_glimmerT_19761-T1
Valid prediction for snap_scaffold_8-snap.1066-T1
Valid prediction for snap_scaffold_8-snap.1072-T1
Valid prediction for GlimmerHMM_glimmerT_19769-T1
Valid prediction for GlimmerHMM_glimmerT_19776-T1
Valid prediction for Augustus_model.g13141.t1
Valid prediction for Augustus_model.g13134.t1
Valid prediction for GlimmerHMM_glimmerT_19775-T1
Valid prediction for snap_scaffold_8-snap.1069-T1
Valid prediction for GlimmerHMM_glimmerT_19782-T1
Valid prediction for Augustus_model.g13136.t1
Valid prediction for snap_scaffold_8-snap.1055-T1
Valid prediction for snap_scaffold_8-snap.1067-T1
Valid prediction for snap_scaffold_8-snap.1063-T1
Valid prediction for GlimmerHMM_glimmerT_19767-T1
Couldn't classify 19136, 19487
Couldn't classify 20763, 20998
Sorry, prediction pasa_asmbl_51834.p1 fails validation.
(GCT)	 CA	19136-19487	GT	TGG
(CCC)	 AG	20763-20998	TT	CCT
Valid prediction for GlimmerHMM_glimmerT_19780-T1
Valid prediction for snap_scaffold_8-snap.1074-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.1051-T1
Valid prediction for snap_scaffold_8-snap.1071-T1
Valid prediction for Augustus_model.g13132.t1
Valid prediction for snap_scaffold_8-snap.1058-T1
Valid prediction for snap_scaffold_8-snap.1062-T1
Valid prediction for snap_scaffold_8-snap.1073-T1
Valid prediction for GlimmerHMM_glimmerT_19779-T1
Valid prediction for GlimmerHMM_glimmerT_19773-T1
Valid prediction for snap_scaffold_8-snap.1061-T1
Valid prediction for Augustus_model.g13142.t1
Valid prediction for snap_scaffold_8-snap.1057-T1
Valid prediction for GlimmerHMM_glimmerT_19770-T1
Valid prediction for Augustus_model.g13140.t1
Valid prediction for snap_scaffold_8-snap.1059-T1
Valid prediction for GlimmerHMM_glimmerT_19766-T1
Valid prediction for snap_scaffold_8-snap.1054-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13378, rend_intergenic: 5582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24827, rend_intergenic: 21045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125784, rend_intergenic: 124559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127478, rend_intergenic: 125784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155178, rend_intergenic: 143755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 168954
-exon list size: 219


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.7    
3.2    
3.6    
4.1    
4.5    
5.0    
5.4    
5.9    
6.3    
6.8    
7.2    
7.7    
8.1    
8.6    
9.0    
9.5    
10.0    
10.4    
10.9    
11.3    
11.8    
12.2    
12.7    
13.1    
13.6    
14.0    
14.5    
14.9    
15.4    
15.8    
16.3    
16.7    
17.2    
17.6    
18.1    
18.6    
19.0    
19.5    
19.9    
20.4    
20.8    
21.3    
21.7    
22.2    
22.6    
23.1    
23.5    
24.0    
24.4    
24.9    
25.3    
25.8    
26.2    
26.7    
27.1    
27.6    
28.1    
28.5    
29.0    
29.4    
29.9    
30.3    
30.8    
31.2    
31.7    
32.1    
32.6    
33.0    
33.5    
33.9    
34.4    
34.8    
35.3    
35.7    
36.2    
36.7    
37.1    
37.6    
38.0    
38.5    
38.9    
39.4    
39.8    
40.3    
40.7    
41.2    
41.6    
42.1    
42.5    
43.0    
43.4    
43.9    
44.3    
44.8    
45.2    
45.7    
46.2    
46.6    
47.1    
47.5    
48.0    
48.4    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.6    
52.0    
52.5    
52.9    
53.4    
53.8    
54.3    
54.8    
55.2    
55.7    
56.1    
56.6    
57.0    
57.5    
57.9    
58.4    
58.8    
59.3    
59.7    
60.2    
60.6    
61.1    
61.5    
62.0    
62.4    
62.9    
63.3    
63.8    
64.3    
64.7    
65.2    
65.6    
66.1    
66.5    
67.0    
67.4    
67.9    
68.3    
68.8    
69.2    
69.7    
70.1    
70.6    
71.0    
71.5    
71.9    
72.4    
72.9    
73.3    
73.8    
74.2    
74.7    
75.1    
75.6    
76.0    
76.5    
76.9    
77.4    
77.8    
78.3    
78.7    
79.2    
79.6    
80.1    
80.5    
81.0    
81.4    
81.9    
82.4    
82.8    
83.3    
83.7    
84.2    
84.6    
85.1    
85.5    
86.0    
86.4    
86.9    
87.3    
87.8    
88.2    
88.7    
89.1    
89.6    
90.0    
90.5    
91.0    
91.4    
91.9    
92.3    
92.8    
93.2    
93.7    
94.1    
94.6    
95.0    
95.5    
95.9    
96.4    
96.8    
97.3    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 13378, rend_intergenic: 5582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24827, rend_intergenic: 21045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125784, rend_intergenic: 124559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127478, rend_intergenic: 125784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155178, rend_intergenic: 143755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support