-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_5085475-5272980

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.1025-T1
Valid prediction for snap_scaffold_8-snap.1015-T1
Valid prediction for snap_scaffold_8-snap.1036-T1
Valid prediction for GlimmerHMM_glimmerT_19739-T1
Valid prediction for Augustus_model.g13120.t1
Valid prediction for GlimmerHMM_glimmerT_19737-T1
Valid prediction for Augustus_model.g13114.t1
Valid prediction for GlimmerHMM_glimmerT_19750-T1
Valid prediction for Augustus_model.g13125.t1
Valid prediction for Augustus_model.g13119.t1
Valid prediction for snap_scaffold_8-snap.1029-T1
Valid prediction for snap_scaffold_8-snap.1021-T1
Valid prediction for GlimmerHMM_glimmerT_19745-T1
Valid prediction for Augustus_model.g13117.t1
Valid prediction for Augustus_model.g13118.t1
Valid prediction for snap_scaffold_8-snap.1040-T1
Valid prediction for snap_scaffold_8-snap.1035-T1
Valid prediction for GlimmerHMM_glimmerT_19746-T1
Valid prediction for GlimmerHMM_glimmerT_19736-T1
Valid prediction for snap_scaffold_8-snap.1012-T1
Valid prediction for snap_scaffold_8-snap.1049-T1
Valid prediction for snap_scaffold_8-snap.1019-T1
Valid prediction for Augustus_model.g13115.t1
Valid prediction for GlimmerHMM_glimmerT_19751-T1
Valid prediction for snap_scaffold_8-snap.1042-T1
Valid prediction for snap_scaffold_8-snap.1016-T1
Valid prediction for snap_scaffold_8-snap.1033-T1
Valid prediction for snap_scaffold_8-snap.1022-T1
Valid prediction for snap_scaffold_8-snap.1028-T1
Valid prediction for Augustus_model.g13124.t1
Valid prediction for snap_scaffold_8-snap.1034-T1
Valid prediction for Augustus_model.g13113.t1
Valid prediction for GlimmerHMM_glimmerT_19741-T1
Valid prediction for Augustus_model.g13116.t1
Valid prediction for Augustus_model.g13126.t1
Valid prediction for snap_scaffold_8-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_19756-T1
Valid prediction for GlimmerHMM_glimmerT_19734-T1
Valid prediction for GlimmerHMM_glimmerT_19735-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19742-T1
Valid prediction for snap_scaffold_8-snap.1045-T1
Valid prediction for snap_scaffold_8-snap.1020-T1
Valid prediction for snap_scaffold_8-snap.1050-T1
Valid prediction for snap_scaffold_8-snap.1010-T1
Valid prediction for snap_scaffold_8-snap.1046-T1
Valid prediction for snap_scaffold_8-snap.1027-T1
Valid prediction for GlimmerHMM_glimmerT_19754-T1
Valid prediction for GlimmerHMM_glimmerT_19755-T1
Valid prediction for snap_scaffold_8-snap.1026-T1
Valid prediction for Augustus_model.g13128.t1
Valid prediction for snap_scaffold_8-snap.1047-T1
Valid prediction for snap_scaffold_8-snap.1041-T1
Valid prediction for snap_scaffold_8-snap.1023-T1
Valid prediction for GlimmerHMM_glimmerT_19740-T1
Valid prediction for GlimmerHMM_glimmerT_19743-T1
Valid prediction for snap_scaffold_8-snap.1048-T1
Valid prediction for snap_scaffold_8-snap.1043-T1
Valid prediction for GlimmerHMM_glimmerT_19749-T1
Valid prediction for snap_scaffold_8-snap.1032-T1
Valid prediction for snap_scaffold_8-snap.1030-T1
Valid prediction for Augustus_model.g13122.t1
Valid prediction for GlimmerHMM_glimmerT_19744-T1
Valid prediction for GlimmerHMM_glimmerT_19757-T1
Valid prediction for snap_scaffold_8-snap.1017-T1
Valid prediction for snap_scaffold_8-snap.1013-T1
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 102214, 102241
Couldn't classify 103784, 103902
Sorry, prediction pasa_asmbl_52585.p1 fails validation.
(ACG)	 AC	102214-102241	GT	GGG
(TGA)	 AG	102975-103202	GT	GGG
(TGC)	 AG	103434-103535	GT	GGG
(GGC)	 AG	103784-103902	AT	TCA
-recovered pasa_asmbl_52585.p1, internal, 102975, 103202
-recovered pasa_asmbl_52585.p1, internal, 103434, 103535
Valid prediction for Augustus_model.g13127.t1
Valid prediction for Augustus_model.g13123.t1
Valid prediction for GlimmerHMM_glimmerT_19748-T1
Valid prediction for Augustus_model.g13129.t1
Valid prediction for snap_scaffold_8-snap.1038-T1
Valid prediction for GlimmerHMM_glimmerT_19753-T1
Valid prediction for Augustus_model.g13130.t1
Valid prediction for Augustus_model.g13121.t1
Valid prediction for snap_scaffold_8-snap.1037-T1
Valid prediction for GlimmerHMM_glimmerT_19747-T1
Valid prediction for snap_scaffold_8-snap.1024-T1
Valid prediction for snap_scaffold_8-snap.1014-T1
Valid prediction for snap_scaffold_8-snap.1039-T1
Valid prediction for snap_scaffold_8-snap.1031-T1
Valid prediction for snap_scaffold_8-snap.1044-T1
Couldn't classify 55128, 55268
Sorry, prediction pasa_asmbl_51828.p1 fails validation.
(GAT)	 TG	55128-55268	GT	AGG
(GGT)	 AG	55615-55710	GT	AGG
(CTT)	 AG	56071-56186	GT	CAG
(GTC)	 AG	56759-56765	TG	GAT
-recovered pasa_asmbl_51828.p1, terminal, 56759, 56765
-recovered pasa_asmbl_51828.p1, internal, 55615, 55710
-recovered pasa_asmbl_51828.p1, internal, 56071, 56186
Valid prediction for snap_scaffold_8-snap.1018-T1
Valid prediction for GlimmerHMM_glimmerT_19738-T1
Valid prediction for GlimmerHMM_glimmerT_19752-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13352, rend_intergenic: 5182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23339, rend_intergenic: 15559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27317, rend_intergenic: 24420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36931, rend_intergenic: 28667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39993, rend_intergenic: 38074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41964, rend_intergenic: 40135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57818, rend_intergenic: 47724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62818, rend_intergenic: 61566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66932, rend_intergenic: 64797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99542, rend_intergenic: 83606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142353, rend_intergenic: 131865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185039, rend_intergenic: 182686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 187506
-exon list size: 332


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
41.0    
41.3    
41.6    
41.9    
42.2    
42.5    
42.8    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.2    
57.5    
57.8    
58.1    
58.4    
58.7    
59.0    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 13352, rend_intergenic: 5182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23339, rend_intergenic: 15559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27317, rend_intergenic: 24420  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36931, rend_intergenic: 28667  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39993, rend_intergenic: 38074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41964, rend_intergenic: 40135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57818, rend_intergenic: 47724  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62818, rend_intergenic: 61566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66932, rend_intergenic: 64797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99542, rend_intergenic: 83606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142353, rend_intergenic: 131865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185039, rend_intergenic: 182686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support