-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_4916478-5087711

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19722-T1
Valid prediction for GlimmerHMM_glimmerT_19719-T1
Valid prediction for snap_scaffold_8-snap.985-T1
Valid prediction for snap_scaffold_8-snap.1004-T1
Valid prediction for snap_scaffold_8-snap.995-T1
Valid prediction for snap_scaffold_8-snap.978-T1
Valid prediction for snap_scaffold_8-snap.1008-T1
Valid prediction for snap_scaffold_8-snap.974-T1
Valid prediction for snap_scaffold_8-snap.975-T1
Valid prediction for snap_scaffold_8-snap.996-T1
Valid prediction for Augustus_model.g13110.t1
Valid prediction for snap_scaffold_8-snap.1000-T1
Valid prediction for GlimmerHMM_glimmerT_19732-T1
Valid prediction for GlimmerHMM_glimmerT_19729-T1
Valid prediction for Augustus_model.g13103.t1
Valid prediction for GlimmerHMM_glimmerT_19715-T1
Valid prediction for GlimmerHMM_glimmerT_19731-T1
Valid prediction for snap_scaffold_8-snap.1001-T1
Valid prediction for snap_scaffold_8-snap.976-T1
Valid prediction for GlimmerHMM_glimmerT_19705-T1
Valid prediction for snap_scaffold_8-snap.1009-T1
Valid prediction for snap_scaffold_8-snap.980-T1
Valid prediction for snap_scaffold_8-snap.993-T1
Valid prediction for GlimmerHMM_glimmerT_19707-T1
Valid prediction for snap_scaffold_8-snap.991-T1
Valid prediction for snap_scaffold_8-snap.992-T1
Valid prediction for snap_scaffold_8-snap.994-T1
Valid prediction for snap_scaffold_8-snap.997-T1
Valid prediction for GlimmerHMM_glimmerT_19721-T1
Valid prediction for snap_scaffold_8-snap.1007-T1
Valid prediction for snap_scaffold_8-snap.973-T1
Valid prediction for snap_scaffold_8-snap.984-T1
Valid prediction for snap_scaffold_8-snap.989-T1
Valid prediction for Augustus_model.g13111.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19713-T1
Valid prediction for pasa_asmbl_51822.p1
Valid prediction for Augustus_model.g13106.t1
Valid prediction for GlimmerHMM_glimmerT_19718-T1
Valid prediction for GlimmerHMM_glimmerT_19712-T1
Valid prediction for snap_scaffold_8-snap.990-T1
Valid prediction for snap_scaffold_8-snap.999-T1
Valid prediction for Augustus_model.g13107.t1
Valid prediction for GlimmerHMM_glimmerT_19717-T1
Valid prediction for snap_scaffold_8-snap.1002-T1
Valid prediction for snap_scaffold_8-snap.1005-T1
Valid prediction for snap_scaffold_8-snap.983-T1
Valid prediction for GlimmerHMM_glimmerT_19706-T1
Valid prediction for Augustus_model.g13109.t1
Valid prediction for GlimmerHMM_glimmerT_19714-T1
Valid prediction for snap_scaffold_8-snap.979-T1
Valid prediction for GlimmerHMM_glimmerT_19733-T1
Valid prediction for Augustus_model.g13102.t1
Valid prediction for GlimmerHMM_glimmerT_19725-T1
Valid prediction for snap_scaffold_8-snap.982-T1
Valid prediction for snap_scaffold_8-snap.1006-T1
Valid prediction for GlimmerHMM_glimmerT_19728-T1
Valid prediction for snap_scaffold_8-snap.972-T1
Valid prediction for GlimmerHMM_glimmerT_19709-T1
Valid prediction for Augustus_model.g13104.t1
Couldn't classify 164654, 164743
Couldn't classify 165292, 165428
Sorry, prediction pasa_asmbl_52595.p1 fails validation.
(AAA)	 AG	164654-164743	GT	ATG
(TCG)	 AG	164840-164990	GT	CGG
(TCT)	 AG	165292-165428	CA	TCC
-recovered pasa_asmbl_52595.p1, internal, 164654, 164743
-recovered pasa_asmbl_52595.p1, internal, 164840, 164990
Valid prediction for snap_scaffold_8-snap.981-T1
Valid prediction for Augustus_model.g13101.t1
Valid prediction for Augustus_model.g13105.t1
Valid prediction for GlimmerHMM_glimmerT_19730-T1
Valid prediction for GlimmerHMM_glimmerT_19716-T1
Valid prediction for CodingQuarry_transcript_59651-T1
Valid prediction for HiQ_model.g13099.t1
Valid prediction for snap_scaffold_8-snap.987-T1
Valid prediction for GlimmerHMM_glimmerT_19723-T1
Valid prediction for snap_scaffold_8-snap.998-T1
Valid prediction for GlimmerHMM_glimmerT_19724-T1
Valid prediction for snap_scaffold_8-snap.1003-T1
Valid prediction for GlimmerHMM_glimmerT_19710-T1
Valid prediction for snap_scaffold_8-snap.988-T1
Valid prediction for GlimmerHMM_glimmerT_19708-T1
Couldn't classify 165935, 166105
Couldn't classify 166421, 166465
Sorry, prediction pasa_asmbl_52604.p1 fails validation.
(AAC)	 AC	165935-166105	GT	AGG
(ATT)	 AG	166213-166293	GT	AGG
(ACT)	 AG	166421-166465	AC	ACA
-recovered pasa_asmbl_52604.p1, internal, 166213, 166293
Valid prediction for Augustus_model.g13097.t1
Valid prediction for GlimmerHMM_glimmerT_19726-T1
Valid prediction for snap_scaffold_8-snap.977-T1
Valid prediction for GlimmerHMM_glimmerT_19727-T1
Valid prediction for HiQ_model.g13100.t1
Valid prediction for snap_scaffold_8-snap.986-T1
Valid prediction for Augustus_model.g13108.t1
Valid prediction for GlimmerHMM_glimmerT_19720-T1
Valid prediction for Augustus_model.g13098.t1
Valid prediction for GlimmerHMM_glimmerT_19711-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29177, rend_intergenic: 4513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37932, rend_intergenic: 32416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53526, rend_intergenic: 44461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84427, rend_intergenic: 78524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85905, rend_intergenic: 84552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118401, rend_intergenic: 85961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125549, rend_intergenic: 121431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138249, rend_intergenic: 128902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148996, rend_intergenic: 140323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153921, rend_intergenic: 151422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 171234
-exon list size: 356


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
2.0    
2.2    
2.5    
2.8    
3.1    
3.4    
3.6    
3.9    
4.2    
4.5    
4.7    
5.0    
5.3    
5.6    
5.9    
6.1    
6.4    
6.7    
7.0    
7.3    
7.5    
7.8    
8.1    
8.4    
8.7    
8.9    
9.2    
9.5    
9.8    
10.1    
10.3    
10.6    
10.9    
11.2    
11.5    
11.7    
12.0    
12.3    
12.6    
12.8    
13.1    
13.4    
13.7    
14.0    
14.2    
14.5    
14.8    
15.1    
15.4    
15.6    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.9    
18.2    
18.4    
18.7    
19.0    
19.3    
19.6    
19.8    
20.1    
20.4    
20.7    
20.9    
21.2    
21.5    
21.8    
22.1    
22.3    
22.6    
22.9    
23.2    
23.5    
23.7    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.3    
26.5    
26.8    
27.1    
27.4    
27.7    
27.9    
28.2    
28.5    
28.8    
29.1    
29.3    
29.6    
29.9    
30.2    
30.4    
30.7    
31.0    
31.3    
31.6    
31.8    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.4    
34.6    
34.9    
35.2    
35.5    
35.8    
36.0    
36.3    
36.6    
36.9    
37.2    
37.4    
37.7    
38.0    
38.3    
38.5    
38.8    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.1    
41.3    
41.6    
41.9    
42.2    
42.5    
42.7    
43.0    
43.3    
43.6    
43.9    
44.1    
44.4    
44.7    
45.0    
45.3    
45.5    
45.8    
46.1    
46.4    
46.6    
46.9    
47.2    
47.5    
47.8    
48.0    
48.3    
48.6    
48.9    
49.2    
49.4    
49.7    
50.0    
50.3    
50.6    
50.8    
51.1    
51.4    
51.7    
52.0    
52.2    
52.5    
52.8    
53.1    
53.4    
53.6    
53.9    
54.2    
54.5    
54.7    
55.0    
55.3    
55.6    
55.9    
56.1    
56.4    
56.7    
57.0    
57.3    
57.5    
57.8    
58.1    
58.4    
58.7    
58.9    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.2    
61.5    
61.7    
62.0    
62.3    
62.6    
62.8    
63.1    
63.4    
63.7    
64.0    
64.2    
64.5    
64.8    
65.1    
65.4    
65.6    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.2    
68.4    
68.7    
69.0    
69.3    
69.6    
69.8    
70.1    
70.4    
70.7    
70.9    
71.2    
71.5    
71.8    
72.1    
72.3    
72.6    
72.9    
73.2    
73.5    
73.7    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.3    
76.5    
76.8    
77.1    
77.4    
77.7    
77.9    
78.2    
78.5    
78.8    
79.1    
79.3    
79.6    
79.9    
80.2    
80.4    
80.7    
81.0    
81.3    
81.6    
81.8    
82.1    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.4    
84.6    
84.9    
85.2    
85.5    
85.8    
86.0    
86.3    
86.6    
86.9    
87.2    
87.4    
87.7    
88.0    
88.3    
88.5    
88.8    
89.1    
89.4    
89.7    
89.9    
90.2    
90.5    
90.8    
91.1    
91.3    
91.6    
91.9    
92.2    
92.5    
92.7    
93.0    
93.3    
93.6    
93.9    
94.1    
94.4    
94.7    
95.0    
95.3    
95.5    
95.8    
96.1    
96.4    
96.6    
96.9    
97.2    
97.5    
97.8    
98.0    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 29177, rend_intergenic: 4513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37932, rend_intergenic: 32416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53526, rend_intergenic: 44461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84427, rend_intergenic: 78524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85905, rend_intergenic: 84552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118401, rend_intergenic: 85961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125549, rend_intergenic: 121431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138249, rend_intergenic: 128902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148996, rend_intergenic: 140323  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153921, rend_intergenic: 151422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support