-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_4685207-4919460 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.966-T1 Valid prediction for GlimmerHMM_glimmerT_19679-T1 Valid prediction for GlimmerHMM_glimmerT_19676-T1 Valid prediction for CodingQuarry_transcript_59645-T1 Valid prediction for GlimmerHMM_glimmerT_19692-T1 Valid prediction for HiQ_model.g13096.t1 Valid prediction for GlimmerHMM_glimmerT_19686-T1 Valid prediction for HiQ_model.g13092.t1 Valid prediction for GlimmerHMM_glimmerT_19699-T1 Valid prediction for Augustus_model.g13095.t1 Valid prediction for Augustus_model.g13086.t1 Valid prediction for Augustus_model.g13082.t1 Valid prediction for Augustus_model.g13091.t1 Couldn't classify 196263, 196303 Couldn't classify 199482, 199645 Sorry, prediction pasa_asmbl_53640.p1 fails validation. (AGA) GC 196263-196303 GT AGG (GTG) AG 197017-197224 GT AGG (TAT) AG 197670-197883 GT GGG (GTG) AG 198211-198335 GT ATG (GTG) AG 198880-199051 GT ACG (GGA) AG 199482-199645 GA CCG -recovered pasa_asmbl_53640.p1, internal, 197017, 197224 -recovered pasa_asmbl_53640.p1, internal, 197670, 197883 -recovered pasa_asmbl_53640.p1, internal, 198211, 198335 -recovered pasa_asmbl_53640.p1, internal, 198880, 199051 Valid prediction for snap_scaffold_8-snap.962-T1 Valid prediction for snap_scaffold_8-snap.950-T1 Valid prediction for HiQ_model.g13093.t1 Valid prediction for GlimmerHMM_glimmerT_19694-T1 Valid prediction for snap_scaffold_8-snap.965-T1 Valid prediction for snap_scaffold_8-snap.952-T1 Valid prediction for GlimmerHMM_glimmerT_19703-T1 Valid prediction for pasa_asmbl_52870.p1 Valid prediction for CodingQuarry_transcript_59648-T1 Valid prediction for snap_scaffold_8-snap.958-T1 Valid prediction for snap_scaffold_8-snap.945-T1 Valid prediction for pasa_asmbl_52851.p1 Valid prediction for snap_scaffold_8-snap.942-T1 Couldn't classify 152778, 153320 Sorry, prediction pasa_asmbl_52855.p1 fails validation. (ATG) CA 152778-153320 GG GAG Valid prediction for HiQ_model.g13087.t1 Valid prediction for snap_scaffold_8-snap.957-T1 Valid prediction for snap_scaffold_8-snap.941-T1 Valid prediction for snap_scaffold_8-snap.931-T1 Valid prediction for HiQ_model.g13089.t1 Valid prediction for GlimmerHMM_glimmerT_19696-T1 Valid prediction for snap_scaffold_8-snap.930-T1 Valid prediction for HiQ_model.g13084.t1 Valid prediction for CodingQuarry_transcript_59644-T1 Valid prediction for snap_scaffold_8-snap.929-T1 Valid prediction for CodingQuarry_transcript_59637-T1 Valid prediction for snap_scaffold_8-snap.967-T1 Valid prediction for snap_scaffold_8-snap.923-T1 Valid prediction for CodingQuarry_transcript_59650-T1 Valid prediction for GlimmerHMM_glimmerT_19689-T1 Valid prediction for CodingQuarry_transcript_59647-T1 Valid prediction for pasa_asmbl_52874.p1 Valid prediction for HiQ_model.g13094.t1 Valid prediction for snap_scaffold_8-snap.947-T1 Couldn't classify 199837, 199878 Sorry, prediction pasa_asmbl_52873.p1 fails validation. (CTT) AT 199837-199878 GT TGG (ATC) AG 200012-200084 GT AGG (GCA) AG 201246-201346 GT TGG (GTG) AG 201662-201796 GT CAG (AAA) AG 202138-202191 GT AGG (GGT) AG 202278-202418 GT GGG (CGG) AG 202603-202737 GT AGG (TTG) AG 202947-203224 GT AAG (TGA) AG 203475-203703 GT AGG (GTC) AG 204023-204178 GT TGG (GAC) AG 204295-204438 GT CGG (ATG) AG 205850-205978 GT AGG (ATG) AG 206149-206400 GT TGG (GTG) AG 206700-206874 GT TGG (TGT) AG 207768-207900 GT AAG (TAA) AG 208041-208222 GT AAG (AGT) AG 208369-208501 GT AGG (GGT) AG 208595-209388 GT GGG (GTC) AG 210518-210612 GT AGG (CTG) AG 211167-211257 GT CAG (CTC) AG 211485-211564 GT TGG (GAA) AG 211948-211985 GT CTG (CAG) AG 212524-212552 GT CGG (CTG) AG 212650-212703 GT CTG (CCA) AG 212872-212916 GT CGG (CTG) AG 213005-213070 GT AGG (GTG) AG 213481-213764 GT GGG (GAA) AG 213990-214072 GT AGG (GTT) AG 214396-214601 GT AGG (GAG) AG 214709-214760 GT GGG (ATC) AG 214859-214965 GT AGG (ATC) AG 215065-215177 GC AGG -recovered pasa_asmbl_52873.p1, initial, 205850, 205978 -recovered pasa_asmbl_52873.p1, initial, 206149, 206400 -recovered pasa_asmbl_52873.p1, terminal, 215065, 215177 -recovered pasa_asmbl_52873.p1, internal, 200012, 200084 -recovered pasa_asmbl_52873.p1, internal, 201246, 201346 -recovered pasa_asmbl_52873.p1, internal, 201662, 201796 -recovered pasa_asmbl_52873.p1, internal, 202138, 202191 -recovered pasa_asmbl_52873.p1, internal, 202278, 202418 -recovered pasa_asmbl_52873.p1, internal, 202603, 202737 -recovered pasa_asmbl_52873.p1, internal, 202947, 203224 -recovered pasa_asmbl_52873.p1, internal, 203475, 203703 -recovered pasa_asmbl_52873.p1, internal, 204023, 204178 -recovered pasa_asmbl_52873.p1, internal, 204295, 204438 -recovered pasa_asmbl_52873.p1, internal, 205850, 205978 -recovered pasa_asmbl_52873.p1, internal, 206149, 206400 -recovered pasa_asmbl_52873.p1, internal, 206700, 206874 -recovered pasa_asmbl_52873.p1, internal, 207768, 207900 -recovered pasa_asmbl_52873.p1, internal, 208041, 208222 -recovered pasa_asmbl_52873.p1, internal, 208369, 208501 -recovered pasa_asmbl_52873.p1, internal, 208595, 209388 -recovered pasa_asmbl_52873.p1, internal, 210518, 210612 -recovered pasa_asmbl_52873.p1, internal, 211167, 211257 -recovered pasa_asmbl_52873.p1, internal, 211485, 211564 -recovered pasa_asmbl_52873.p1, internal, 211948, 211985 -recovered pasa_asmbl_52873.p1, internal, 212524, 212552 -recovered pasa_asmbl_52873.p1, internal, 212650, 212703 -recovered pasa_asmbl_52873.p1, internal, 212872, 212916 -recovered pasa_asmbl_52873.p1, internal, 213005, 213070 -recovered pasa_asmbl_52873.p1, internal, 213481, 213764 -recovered pasa_asmbl_52873.p1, internal, 213990, 214072 -recovered pasa_asmbl_52873.p1, internal, 214396, 214601 -recovered pasa_asmbl_52873.p1, internal, 214709, 214760 -recovered pasa_asmbl_52873.p1, internal, 214859, 214965 -recovered pasa_asmbl_52873.p1, internal, 215065, 215177 Valid prediction for snap_scaffold_8-snap.936-T1 Valid prediction for snap_scaffold_8-snap.961-T1 Valid prediction for pasa_asmbl_52882.p1 Valid prediction for pasa_asmbl_52858.p1 Valid prediction for GlimmerHMM_glimmerT_19700-T1 Valid prediction for CodingQuarry_transcript_59642-T1 Valid prediction for snap_scaffold_8-snap.932-T1 Valid prediction for snap_scaffold_8-snap.968-T1 Valid prediction for snap_scaffold_8-snap.928-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_8-snap.925-T1 Valid prediction for GlimmerHMM_glimmerT_19698-T1 Valid prediction for snap_scaffold_8-snap.954-T1 Valid prediction for snap_scaffold_8-snap.926-T1 Couldn't classify 153542, 153676 Sorry, prediction pasa_asmbl_52856.p1 fails validation. (ACC) CC 153542-153676 GT AGG (GTT) AG 153916-154200 GT AGG (GTC) AG 154387-154572 GT AGG (GAT) AG 154673-154831 GT AGG (AGT) AG 154937-155146 GT AGG (TTA) AG 155392-155619 GT AAG (ATA) AG 155729-155863 GT TGG (GCC) AG 155984-156109 GT AGG (GCT) AG 156207-156344 AA GAA -recovered pasa_asmbl_52856.p1, terminal, 156207, 156344 -recovered pasa_asmbl_52856.p1, internal, 153916, 154200 -recovered pasa_asmbl_52856.p1, internal, 154387, 154572 -recovered pasa_asmbl_52856.p1, internal, 154673, 154831 -recovered pasa_asmbl_52856.p1, internal, 154937, 155146 -recovered pasa_asmbl_52856.p1, internal, 155392, 155619 -recovered pasa_asmbl_52856.p1, internal, 155729, 155863 -recovered pasa_asmbl_52856.p1, internal, 155984, 156109 Valid prediction for GlimmerHMM_glimmerT_19701-T1 Valid prediction for snap_scaffold_8-snap.937-T1 Valid prediction for CodingQuarry_transcript_59649-T1 Valid prediction for Augustus_model.g13072.t1 Valid prediction for GlimmerHMM_glimmerT_19702-T1 Valid prediction for GlimmerHMM_glimmerT_19675-T1 Valid prediction for CodingQuarry_transcript_59646-T1 Valid prediction for snap_scaffold_8-snap.963-T1 Valid prediction for snap_scaffold_8-snap.964-T1 Valid prediction for CodingQuarry_transcript_59633-T1 Valid prediction for snap_scaffold_8-snap.960-T1 Valid prediction for snap_scaffold_8-snap.970-T1 Valid prediction for CodingQuarry_transcript_59639-T1 Valid prediction for snap_scaffold_8-snap.934-T1 Valid prediction for Augustus_model.g13081.t1 Valid prediction for pasa_asmbl_52853.p1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.940-T1 Valid prediction for GlimmerHMM_glimmerT_19682-T1 Valid prediction for Augustus_model.g13076.t1 Valid prediction for CodingQuarry_transcript_59641-T1 Valid prediction for HiQ_model.g13090.t1 Valid prediction for GlimmerHMM_glimmerT_19693-T1 Valid prediction for pasa_asmbl_51808.p1 Valid prediction for CodingQuarry_transcript_59638-T1 Valid prediction for GlimmerHMM_glimmerT_19697-T1 Valid prediction for snap_scaffold_8-snap.924-T1 Valid prediction for snap_scaffold_8-snap.946-T1 Valid prediction for Augustus_model.g13079.t1 Valid prediction for snap_scaffold_8-snap.953-T1 Valid prediction for snap_scaffold_8-snap.949-T1 Valid prediction for GlimmerHMM_glimmerT_19684-T1 Valid prediction for snap_scaffold_8-snap.938-T1 Valid prediction for snap_scaffold_8-snap.927-T1 Valid prediction for Augustus_model.g13074.t1 Valid prediction for snap_scaffold_8-snap.955-T1 Valid prediction for GlimmerHMM_glimmerT_19685-T1 Valid prediction for Augustus_model.g13073.t1 Valid prediction for CodingQuarry_transcript_59634-T1 Couldn't classify 203557, 203680 Couldn't classify 208590, 208660 Sorry, prediction pasa_asmbl_52598.p1 fails validation. (GAT) CA 203557-203680 GT AGG (ATC) AG 204118-204240 GT TGG (ACA) AG 204520-204645 GT GGG (ATA) AG 205497-205619 GT AGG (ACG) AG 205852-205974 GT AGG (ACA) AG 206129-206296 GT CAG (CGG) AG 206495-206563 GT AGG (ACA) AG 206832-206957 GT AGG (ATG) AG 207898-208020 GT GGG (ACA) AG 208136-208294 GT CAG (CTG) AG 208590-208660 GG TGG add_exon() Sorry, pasa_asmbl_52598.p1 207898-208020-initial-1 is invalid. -recovered pasa_asmbl_52598.p1, initial, 207898, 208020 add_exon() Sorry, pasa_asmbl_52598.p1 205852-205974-terminal-1 is invalid. -recovered pasa_asmbl_52598.p1, terminal, 205852, 205974 -recovered pasa_asmbl_52598.p1, internal, 204118, 204240 -recovered pasa_asmbl_52598.p1, internal, 204520, 204645 -recovered pasa_asmbl_52598.p1, internal, 205497, 205619 -recovered pasa_asmbl_52598.p1, internal, 205852, 205974 -recovered pasa_asmbl_52598.p1, internal, 206129, 206296 -recovered pasa_asmbl_52598.p1, internal, 206495, 206563 -recovered pasa_asmbl_52598.p1, internal, 206832, 206957 -recovered pasa_asmbl_52598.p1, internal, 207898, 208020 -recovered pasa_asmbl_52598.p1, internal, 208136, 208294 Couldn't classify 119028, 119029 Sorry, prediction CodingQuarry_transcript_59636-T1 fails validation. (ATG) AG 119028-119029 GT ATG (GAA) AG 119334-119408 GT CGG (ACT) AG 119504-119573 GT GGG (GGT) AG 119736-119807 CA GAC -recovered CodingQuarry_transcript_59636-T1, terminal, 119736, 119807 -recovered CodingQuarry_transcript_59636-T1, internal, 119028, 119029 -recovered CodingQuarry_transcript_59636-T1, internal, 119334, 119408 -recovered CodingQuarry_transcript_59636-T1, internal, 119504, 119573 Couldn't classify 185672, 185840 Couldn't classify 192153, 192289 Sorry, prediction pasa_asmbl_52581.p1 fails validation. (CCT) GT 185672-185840 GT GGG (ATA) AG 185929-186084 GT AGG (ATG) AG 186461-186580 GT AGG (ATC) AG 186774-186899 GT AGG (ACC) AG 187000-187122 GT AGG (ACA) AG 188371-188493 GT GGG (ACA) AG 189138-189290 GT CGG (CTG) AG 190823-190876 GT AGG (ACA) AG 191058-191183 GT CGG (ACA) AG 191502-191627 GT GGG (ATA) AG 191781-191894 GT GGG (AGA) AG 192153-192289 GG CGG add_exon() Sorry, pasa_asmbl_52581.p1 186461-186580-initial-1 is invalid. -recovered pasa_asmbl_52581.p1, initial, 186461, 186580 add_exon() Sorry, pasa_asmbl_52581.p1 185929-186084-terminal-1 is invalid. -recovered pasa_asmbl_52581.p1, terminal, 185929, 186084 add_exon() Sorry, pasa_asmbl_52581.p1 187000-187122-terminal-1 is invalid. -recovered pasa_asmbl_52581.p1, terminal, 187000, 187122 -recovered pasa_asmbl_52581.p1, internal, 185929, 186084 -recovered pasa_asmbl_52581.p1, internal, 186461, 186580 -recovered pasa_asmbl_52581.p1, internal, 186774, 186899 -recovered pasa_asmbl_52581.p1, internal, 187000, 187122 -recovered pasa_asmbl_52581.p1, internal, 188371, 188493 -recovered pasa_asmbl_52581.p1, internal, 189138, 189290 -recovered pasa_asmbl_52581.p1, internal, 190823, 190876 -recovered pasa_asmbl_52581.p1, internal, 191058, 191183 -recovered pasa_asmbl_52581.p1, internal, 191502, 191627 -recovered pasa_asmbl_52581.p1, internal, 191781, 191894 Valid prediction for GlimmerHMM_glimmerT_19677-T1 Couldn't classify 146542, 146655 Sorry, prediction pasa_asmbl_51795.p1 fails validation. (TTG) TG 146542-146655 GT AGG (ATC) AG 146818-146950 GT GGG (AGA) AG 147075-147237 GT GAG (GTA) AG 147952-148172 GT AGG (GGG) AG 148453-148607 GT AGG (AGC) AG 149821-150040 GT CGG (AGA) AG 150319-150971 CA GAC -recovered pasa_asmbl_51795.p1, terminal, 150319, 150971 -recovered pasa_asmbl_51795.p1, internal, 146818, 146950 -recovered pasa_asmbl_51795.p1, internal, 147075, 147237 -recovered pasa_asmbl_51795.p1, internal, 147952, 148172 -recovered pasa_asmbl_51795.p1, internal, 148453, 148607 -recovered pasa_asmbl_51795.p1, internal, 149821, 150040 Valid prediction for snap_scaffold_8-snap.944-T1 Valid prediction for pasa_asmbl_51801.p1 Valid prediction for snap_scaffold_8-snap.969-T1 Valid prediction for GlimmerHMM_glimmerT_19704-T1 Valid prediction for GlimmerHMM_glimmerT_19678-T1 Valid prediction for GlimmerHMM_glimmerT_19690-T1 Valid prediction for snap_scaffold_8-snap.956-T1 Valid prediction for Augustus_model.g13077.t1 Valid prediction for Augustus_model.g13083.t1 Couldn't classify 133420, 133546 Couldn't classify 133696, 133781 Sorry, prediction CodingQuarry_transcript_59635-T1 fails validation. (ATG) AG 132323-132376 GT TGG (GAA) AG 132942-133055 GT AGG (GTG) AG 133244-133321 GT TGG (ACA) AG 133420-133546 TA GGT (ATC) GG 133696-133781 GT AGG (CTG) AG 133907-133984 GT AAG (ACA) AG 134525-134699 GT AGG (AGT) AG 134838-135016 GT AGG (GCC) AG 135110-135162 GT AGG (CGC) AG 135494-135591 GT GGG (AGC) AG 135681-135763 GT AGG (GAG) AG 135879-135937 GT AAG (CAC) AG 136277-136421 TT GAT -recovered CodingQuarry_transcript_59635-T1, initial, 132323, 132376 add_exon() Sorry, CodingQuarry_transcript_59635-T1 135879-135937-terminal-2 is invalid. -recovered CodingQuarry_transcript_59635-T1, terminal, 135879, 135937 -recovered CodingQuarry_transcript_59635-T1, terminal, 136277, 136421 -recovered CodingQuarry_transcript_59635-T1, internal, 132323, 132376 -recovered CodingQuarry_transcript_59635-T1, internal, 132942, 133055 -recovered CodingQuarry_transcript_59635-T1, internal, 133244, 133321 -recovered CodingQuarry_transcript_59635-T1, internal, 133907, 133984 -recovered CodingQuarry_transcript_59635-T1, internal, 134525, 134699 -recovered CodingQuarry_transcript_59635-T1, internal, 134838, 135016 -recovered CodingQuarry_transcript_59635-T1, internal, 135110, 135162 -recovered CodingQuarry_transcript_59635-T1, internal, 135494, 135591 -recovered CodingQuarry_transcript_59635-T1, internal, 135681, 135763 -recovered CodingQuarry_transcript_59635-T1, internal, 135879, 135937 Valid prediction for HiQ_model.g13085.t1 Valid prediction for GlimmerHMM_glimmerT_19695-T1 Valid prediction for snap_scaffold_8-snap.951-T1 Valid prediction for Augustus_model.g13075.t1 Valid prediction for GlimmerHMM_glimmerT_19688-T1 Valid prediction for HiQ_model.g13078.t1 Valid prediction for snap_scaffold_8-snap.933-T1 Couldn't classify 210461, 210587 Sorry, prediction pasa_asmbl_51790.p1 fails validation. (GAC) CA 210461-210587 GT CGG (ATG) AG 210702-210818 GT CGG (ACA) AG 211027-211152 GT CGG (ATG) AG 211254-211373 GT AGG (ATA) AG 212148-212273 GT GGG (ATA) AG 214363-214515 GT AGG (AGT) AG 214623-214685 GT AGG (ACA) AG 214798-214923 GC AGG (ACA) AG 215067-215186 GT AGG (ACA) AG 215355-215477 GT AGG (ACC) AG 216332-216463 GT TGG (ATC) AG 216943-217068 GT AGG (ATA) AG 218350-218556 GT AGG (ATA) AG 218651-218776 GT GGG (ATG) AG 218980-219102 GT AGG (ATC) AG 220239-220355 GT CGG (ATA) AG 220932-221060 GT AGG (ACA) AG 221270-221389 GT GGG (ACG) AG 221754-221985 GT GGG (GCA) AG 222069-222252 GT AGG (GGA) AG 222373-222756 CC AAC -recovered pasa_asmbl_51790.p1, initial, 210702, 210818 add_exon() Sorry, pasa_asmbl_51790.p1 211254-211373-initial-1 is invalid. -recovered pasa_asmbl_51790.p1, initial, 211254, 211373 -recovered pasa_asmbl_51790.p1, initial, 218980, 219102 -recovered pasa_asmbl_51790.p1, terminal, 214623, 214685 add_exon() Sorry, pasa_asmbl_51790.p1 216943-217068-terminal-1 is invalid. -recovered pasa_asmbl_51790.p1, terminal, 216943, 217068 -recovered pasa_asmbl_51790.p1, terminal, 222373, 222756 -recovered pasa_asmbl_51790.p1, internal, 210702, 210818 -recovered pasa_asmbl_51790.p1, internal, 211027, 211152 -recovered pasa_asmbl_51790.p1, internal, 211254, 211373 -recovered pasa_asmbl_51790.p1, internal, 212148, 212273 -recovered pasa_asmbl_51790.p1, internal, 214363, 214515 -recovered pasa_asmbl_51790.p1, internal, 214623, 214685 -recovered pasa_asmbl_51790.p1, internal, 214798, 214923 -recovered pasa_asmbl_51790.p1, internal, 215067, 215186 -recovered pasa_asmbl_51790.p1, internal, 215355, 215477 -recovered pasa_asmbl_51790.p1, internal, 216332, 216463 -recovered pasa_asmbl_51790.p1, internal, 216943, 217068 -recovered pasa_asmbl_51790.p1, internal, 218350, 218556 -recovered pasa_asmbl_51790.p1, internal, 218651, 218776 -recovered pasa_asmbl_51790.p1, internal, 218980, 219102 -recovered pasa_asmbl_51790.p1, internal, 220239, 220355 -recovered pasa_asmbl_51790.p1, internal, 220932, 221060 -recovered pasa_asmbl_51790.p1, internal, 221270, 221389 -recovered pasa_asmbl_51790.p1, internal, 221754, 221985 -recovered pasa_asmbl_51790.p1, internal, 222069, 222252 Valid prediction for GlimmerHMM_glimmerT_19687-T1 Valid prediction for snap_scaffold_8-snap.959-T1 Valid prediction for snap_scaffold_8-snap.948-T1 Valid prediction for GlimmerHMM_glimmerT_19680-T1 Valid prediction for CodingQuarry_transcript_59640-T1 Valid prediction for GlimmerHMM_glimmerT_19691-T1 Valid prediction for snap_scaffold_8-snap.935-T1 Valid prediction for Augustus_model.g13080.t1 Valid prediction for HiQ_model.g13088.t1 Valid prediction for GlimmerHMM_glimmerT_19681-T1 Valid prediction for GlimmerHMM_glimmerT_19683-T1 Valid prediction for CodingQuarry_transcript_59643-T1 Valid prediction for pasa_asmbl_51797.p1 Valid prediction for pasa_asmbl_51812.p1 Valid prediction for snap_scaffold_8-snap.943-T1 Valid prediction for snap_scaffold_8-snap.939-T1 Valid prediction for snap_scaffold_8-snap.971-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26117, rend_intergenic: 16576 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27479, rend_intergenic: 26894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48825, rend_intergenic: 28825 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49032, rend_intergenic: 48888 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57058, rend_intergenic: 52062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62500, rend_intergenic: 58102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80907, rend_intergenic: 67930 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92255, rend_intergenic: 82228 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103831, rend_intergenic: 102070 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107076, rend_intergenic: 106661 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109588, rend_intergenic: 107727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225400, rend_intergenic: 218110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 234254 -exon list size: 612 building trellis 0.2 0.3 0.5 0.7 0.8 1.0 1.1 1.3 1.5 1.6 1.8 2.0 2.1 2.3 2.4 2.6 2.8 2.9 3.1 3.3 3.4 3.6 3.7 3.9 4.1 4.2 4.4 4.6 4.7 4.9 5.0 5.2 5.4 5.5 5.7 5.9 6.0 6.2 6.4 6.5 6.7 6.8 7.0 7.2 7.3 7.5 7.7 7.8 8.0 8.1 8.3 8.5 8.6 8.8 9.0 9.1 9.3 9.4 9.6 9.8 9.9 10.1 10.3 10.4 10.6 10.7 10.9 11.1 11.2 11.4 11.6 11.7 11.9 12.1 12.2 12.4 12.5 12.7 12.9 13.0 13.2 13.4 13.5 13.7 13.8 14.0 14.2 14.3 14.5 14.7 14.8 15.0 15.1 15.3 15.5 15.6 15.8 16.0 16.1 16.3 16.4 16.6 16.8 16.9 17.1 17.3 17.4 17.6 17.8 17.9 18.1 18.2 18.4 18.6 18.7 18.9 19.1 19.2 19.4 19.5 19.7 19.9 20.0 20.2 20.4 20.5 20.7 20.8 21.0 21.2 21.3 21.5 21.7 21.8 22.0 22.1 22.3 22.5 22.6 22.8 23.0 23.1 23.3 23.5 23.6 23.8 23.9 24.1 24.3 24.4 24.6 24.8 24.9 25.1 25.2 25.4 25.6 25.7 25.9 26.1 26.2 26.4 26.5 26.7 26.9 27.0 27.2 27.4 27.5 27.7 27.9 28.0 28.2 28.3 28.5 28.7 28.8 29.0 29.2 29.3 29.5 29.6 29.8 30.0 30.1 30.3 30.5 30.6 30.8 30.9 31.1 31.3 31.4 31.6 31.8 31.9 32.1 32.2 32.4 32.6 32.7 32.9 33.1 33.2 33.4 33.6 33.7 33.9 34.0 34.2 34.4 34.5 34.7 34.9 35.0 35.2 35.3 35.5 35.7 35.8 36.0 36.2 36.3 36.5 36.6 36.8 37.0 37.1 37.3 37.5 37.6 37.8 37.9 38.1 38.3 38.4 38.6 38.8 38.9 39.1 39.3 39.4 39.6 39.7 39.9 40.1 40.2 40.4 40.6 40.7 40.9 41.0 41.2 41.4 41.5 41.7 41.9 42.0 42.2 42.3 42.5 42.7 42.8 43.0 43.2 43.3 43.5 43.6 43.8 44.0 44.1 44.3 44.5 44.6 44.8 45.0 45.1 45.3 45.4 45.6 45.8 45.9 46.1 46.3 46.4 46.6 46.7 46.9 47.1 47.2 47.4 47.6 47.7 47.9 48.0 48.2 48.4 48.5 48.7 48.9 49.0 49.2 49.3 49.5 49.7 49.8 50.0 50.2 50.3 50.5 50.7 50.8 51.0 51.1 51.3 51.5 51.6 51.8 52.0 52.1 52.3 52.4 52.6 52.8 52.9 53.1 53.3 53.4 53.6 53.7 53.9 54.1 54.2 54.4 54.6 54.7 54.9 55.0 55.2 55.4 55.5 55.7 55.9 56.0 56.2 56.4 56.5 56.7 56.8 57.0 57.2 57.3 57.5 57.7 57.8 58.0 58.1 58.3 58.5 58.6 58.8 59.0 59.1 59.3 59.4 59.6 59.8 59.9 60.1 60.3 60.4 60.6 60.7 60.9 61.1 61.2 61.4 61.6 61.7 61.9 62.1 62.2 62.4 62.5 62.7 62.9 63.0 63.2 63.4 63.5 63.7 63.8 64.0 64.2 64.3 64.5 64.7 64.8 65.0 65.1 65.3 65.5 65.6 65.8 66.0 66.1 66.3 66.4 66.6 66.8 66.9 67.1 67.3 67.4 67.6 67.8 67.9 68.1 68.2 68.4 68.6 68.7 68.9 69.1 69.2 69.4 69.5 69.7 69.9 70.0 70.2 70.4 70.5 70.7 70.8 71.0 71.2 71.3 71.5 71.7 71.8 72.0 72.1 72.3 72.5 72.6 72.8 73.0 73.1 73.3 73.5 73.6 73.8 73.9 74.1 74.3 74.4 74.6 74.8 74.9 75.1 75.2 75.4 75.6 75.7 75.9 76.1 76.2 76.4 76.5 76.7 76.9 77.0 77.2 77.4 77.5 77.7 77.9 78.0 78.2 78.3 78.5 78.7 78.8 79.0 79.2 79.3 79.5 79.6 79.8 80.0 80.1 80.3 80.5 80.6 80.8 80.9 81.1 81.3 81.4 81.6 81.8 81.9 82.1 82.2 82.4 82.6 82.7 82.9 83.1 83.2 83.4 83.6 83.7 83.9 84.0 84.2 84.4 84.5 84.7 84.9 85.0 85.2 85.3 85.5 85.7 85.8 86.0 86.2 86.3 86.5 86.6 86.8 87.0 87.1 87.3 87.5 87.6 87.8 87.9 88.1 88.3 88.4 88.6 88.8 88.9 89.1 89.3 89.4 89.6 89.7 89.9 90.1 90.2 90.4 90.6 90.7 90.9 91.0 91.2 91.4 91.5 91.7 91.9 92.0 92.2 92.3 92.5 92.7 92.8 93.0 93.2 93.3 93.5 93.6 93.8 94.0 94.1 94.3 94.5 94.6 94.8 95.0 95.1 95.3 95.4 95.6 95.8 95.9 96.1 96.3 96.4 96.6 96.7 96.9 97.1 97.2 97.4 97.6 97.7 97.9 98.0 98.2 98.4 98.5 98.7 98.9 99.0 99.2 99.3 99.5 99.7 99.8 -found 35 predictions from path traversal Error with prediction: snap lend_intergenic: 26117, rend_intergenic: 16576 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27479, rend_intergenic: 26894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48825, rend_intergenic: 28825 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49032, rend_intergenic: 48888 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57058, rend_intergenic: 52062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62500, rend_intergenic: 58102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80907, rend_intergenic: 67930 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92255, rend_intergenic: 82228 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103831, rend_intergenic: 102070 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107076, rend_intergenic: 106661 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109588, rend_intergenic: 107727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225400, rend_intergenic: 218110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 30 predictions persist after filtering for low support