-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_4339882-4526443

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19649-T1
Valid prediction for snap_scaffold_8-snap.839-T1
Valid prediction for GlimmerHMM_glimmerT_19631-T1
Valid prediction for GlimmerHMM_glimmerT_19639-T1
Valid prediction for snap_scaffold_8-snap.874-T1
Valid prediction for snap_scaffold_8-snap.852-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.849-T1
Valid prediction for GlimmerHMM_glimmerT_19627-T1
Valid prediction for Augustus_model.g13052.t1
Valid prediction for GlimmerHMM_glimmerT_19648-T1
Valid prediction for Augustus_model.g13056.t1
Valid prediction for snap_scaffold_8-snap.845-T1
Valid prediction for snap_scaffold_8-snap.861-T1
Valid prediction for pasa_asmbl_52839.p1
Valid prediction for snap_scaffold_8-snap.866-T1
Valid prediction for snap_scaffold_8-snap.864-T1
Valid prediction for GlimmerHMM_glimmerT_19638-T1
Valid prediction for GlimmerHMM_glimmerT_19637-T1
Valid prediction for Augustus_model.g13054.t1
Valid prediction for snap_scaffold_8-snap.877-T1
Valid prediction for snap_scaffold_8-snap.853-T1
Valid prediction for snap_scaffold_8-snap.851-T1
Valid prediction for Augustus_model.g13047.t1
Valid prediction for CodingQuarry_transcript_59631-T1
Valid prediction for pasa_asmbl_52846.p1
Valid prediction for snap_scaffold_8-snap.867-T1
Valid prediction for snap_scaffold_8-snap.844-T1
Valid prediction for snap_scaffold_8-snap.858-T1
Valid prediction for snap_scaffold_8-snap.870-T1
Valid prediction for snap_scaffold_8-snap.880-T1
Valid prediction for GlimmerHMM_glimmerT_19647-T1
Valid prediction for snap_scaffold_8-snap.857-T1
Valid prediction for GlimmerHMM_glimmerT_19622-T1
Valid prediction for GlimmerHMM_glimmerT_19644-T1
Valid prediction for CodingQuarry_transcript_59628-T1
Valid prediction for snap_scaffold_8-snap.871-T1
Valid prediction for snap_scaffold_8-snap.868-T1
Valid prediction for HiQ_model.g13043.t1
Valid prediction for GlimmerHMM_glimmerT_19643-T1
Valid prediction for snap_scaffold_8-snap.848-T1
Valid prediction for Augustus_model.g13053.t1
Valid prediction for GlimmerHMM_glimmerT_19626-T1
Valid prediction for GlimmerHMM_glimmerT_19628-T1
Valid prediction for Augustus_model.g13049.t1
Valid prediction for snap_scaffold_8-snap.855-T1
Valid prediction for snap_scaffold_8-snap.881-T1
Valid prediction for snap_scaffold_8-snap.842-T1
Valid prediction for snap_scaffold_8-snap.872-T1
Valid prediction for snap_scaffold_8-snap.863-T1
Valid prediction for Augustus_model.g13051.t1
Valid prediction for GlimmerHMM_glimmerT_19624-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g13044.t1
Valid prediction for Augustus_model.g13057.t1
Valid prediction for GlimmerHMM_glimmerT_19633-T1
Valid prediction for GlimmerHMM_glimmerT_19645-T1
Valid prediction for GlimmerHMM_glimmerT_19630-T1
Valid prediction for snap_scaffold_8-snap.876-T1
Valid prediction for snap_scaffold_8-snap.862-T1
Valid prediction for snap_scaffold_8-snap.859-T1
Valid prediction for Augustus_model.g13045.t1
Valid prediction for snap_scaffold_8-snap.882-T1
Valid prediction for GlimmerHMM_glimmerT_19632-T1
Valid prediction for snap_scaffold_8-snap.856-T1
Valid prediction for snap_scaffold_8-snap.878-T1
Valid prediction for snap_scaffold_8-snap.850-T1
Valid prediction for GlimmerHMM_glimmerT_19640-T1
Valid prediction for GlimmerHMM_glimmerT_19629-T1
Valid prediction for snap_scaffold_8-snap.865-T1
Valid prediction for GlimmerHMM_glimmerT_19651-T1
Valid prediction for snap_scaffold_8-snap.869-T1
Valid prediction for snap_scaffold_8-snap.875-T1
Valid prediction for snap_scaffold_8-snap.846-T1
Valid prediction for snap_scaffold_8-snap.879-T1
Valid prediction for snap_scaffold_8-snap.854-T1
Valid prediction for GlimmerHMM_glimmerT_19646-T1
Valid prediction for GlimmerHMM_glimmerT_19634-T1
Valid prediction for GlimmerHMM_glimmerT_19650-T1
Valid prediction for snap_scaffold_8-snap.847-T1
Valid prediction for GlimmerHMM_glimmerT_19636-T1
Valid prediction for snap_scaffold_8-snap.840-T1
Valid prediction for GlimmerHMM_glimmerT_19625-T1
Valid prediction for Augustus_model.g13048.t1
Valid prediction for GlimmerHMM_glimmerT_19623-T1
Valid prediction for snap_scaffold_8-snap.843-T1
Valid prediction for GlimmerHMM_glimmerT_19641-T1
Valid prediction for GlimmerHMM_glimmerT_19635-T1
Valid prediction for GlimmerHMM_glimmerT_19642-T1
Valid prediction for Augustus_model.g13050.t1
Valid prediction for Augustus_model.g13055.t1
Valid prediction for snap_scaffold_8-snap.860-T1
Valid prediction for snap_scaffold_8-snap.841-T1
Valid prediction for Augustus_model.g13046.t1
Valid prediction for snap_scaffold_8-snap.873-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33137, rend_intergenic: 31922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39856, rend_intergenic: 33388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83891, rend_intergenic: 60348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86550, rend_intergenic: 84009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88003, rend_intergenic: 87244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91950, rend_intergenic: 88514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95356, rend_intergenic: 93799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104679, rend_intergenic: 100723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113478, rend_intergenic: 110909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120333, rend_intergenic: 116003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126682, rend_intergenic: 121987  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132869, rend_intergenic: 129943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144017, rend_intergenic: 143268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153958, rend_intergenic: 144240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157193, rend_intergenic: 155550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157861, rend_intergenic: 157494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162328, rend_intergenic: 158717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170602, rend_intergenic: 167819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184251, rend_intergenic: 172808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 186562
-exon list size: 421


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.7    
1.9    
2.1    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.8    
4.0    
4.3    
4.5    
4.7    
5.0    
5.2    
5.4    
5.7    
5.9    
6.1    
6.4    
6.6    
6.9    
7.1    
7.3    
7.6    
7.8    
8.0    
8.3    
8.5    
8.7    
9.0    
9.2    
9.5    
9.7    
9.9    
10.2    
10.4    
10.6    
10.9    
11.1    
11.3    
11.6    
11.8    
12.1    
12.3    
12.5    
12.8    
13.0    
13.2    
13.5    
13.7    
13.9    
14.2    
14.4    
14.7    
14.9    
15.1    
15.4    
15.6    
15.8    
16.1    
16.3    
16.5    
16.8    
17.0    
17.3    
17.5    
17.7    
18.0    
18.2    
18.4    
18.7    
18.9    
19.1    
19.4    
19.6    
19.9    
20.1    
20.3    
20.6    
20.8    
21.0    
21.3    
21.5    
21.7    
22.0    
22.2    
22.5    
22.7    
22.9    
23.2    
23.4    
23.6    
23.9    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.5    
25.8    
26.0    
26.2    
26.5    
26.7    
27.0    
27.2    
27.4    
27.7    
27.9    
28.1    
28.4    
28.6    
28.8    
29.1    
29.3    
29.6    
29.8    
30.0    
30.3    
30.5    
30.7    
31.0    
31.2    
31.4    
31.7    
31.9    
32.2    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.0    
34.3    
34.5    
34.8    
35.0    
35.2    
35.5    
35.7    
35.9    
36.2    
36.4    
36.6    
36.9    
37.1    
37.4    
37.6    
37.8    
38.1    
38.3    
38.5    
38.8    
39.0    
39.2    
39.5    
39.7    
40.0    
40.2    
40.4    
40.7    
40.9    
41.1    
41.4    
41.6    
41.8    
42.1    
42.3    
42.6    
42.8    
43.0    
43.3    
43.5    
43.7    
44.0    
44.2    
44.4    
44.7    
44.9    
45.2    
45.4    
45.6    
45.9    
46.1    
46.3    
46.6    
46.8    
47.0    
47.3    
47.5    
47.8    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.2    
52.5    
52.7    
53.0    
53.2    
53.4    
53.7    
53.9    
54.1    
54.4    
54.6    
54.8    
55.1    
55.3    
55.6    
55.8    
56.0    
56.3    
56.5    
56.7    
57.0    
57.2    
57.4    
57.7    
57.9    
58.2    
58.4    
58.6    
58.9    
59.1    
59.3    
59.6    
59.8    
60.0    
60.3    
60.5    
60.8    
61.0    
61.2    
61.5    
61.7    
61.9    
62.2    
62.4    
62.6    
62.9    
63.1    
63.4    
63.6    
63.8    
64.1    
64.3    
64.5    
64.8    
65.0    
65.2    
65.5    
65.7    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.8    
68.1    
68.3    
68.6    
68.8    
69.0    
69.3    
69.5    
69.7    
70.0    
70.2    
70.4    
70.7    
70.9    
71.2    
71.4    
71.6    
71.9    
72.1    
72.3    
72.6    
72.8    
73.0    
73.3    
73.5    
73.8    
74.0    
74.2    
74.5    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.1    
76.4    
76.6    
76.8    
77.1    
77.3    
77.5    
77.8    
78.0    
78.3    
78.5    
78.7    
79.0    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.9    
81.1    
81.3    
81.6    
81.8    
82.0    
82.3    
82.5    
82.7    
83.0    
83.2    
83.5    
83.7    
83.9    
84.2    
84.4    
84.6    
84.9    
85.1    
85.3    
85.6    
85.8    
86.1    
86.3    
86.5    
86.8    
87.0    
87.2    
87.5    
87.7    
87.9    
88.2    
88.4    
88.7    
88.9    
89.1    
89.4    
89.6    
89.8    
90.1    
90.3    
90.5    
90.8    
91.0    
91.3    
91.5    
91.7    
92.0    
92.2    
92.4    
92.7    
92.9    
93.1    
93.4    
93.6    
93.9    
94.1    
94.3    
94.6    
94.8    
95.0    
95.3    
95.5    
95.7    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.9    
98.1    
98.3    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 33137, rend_intergenic: 31922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39856, rend_intergenic: 33388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83891, rend_intergenic: 60348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86550, rend_intergenic: 84009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88003, rend_intergenic: 87244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91950, rend_intergenic: 88514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95356, rend_intergenic: 93799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104679, rend_intergenic: 100723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113478, rend_intergenic: 110909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120333, rend_intergenic: 116003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126682, rend_intergenic: 121987  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132869, rend_intergenic: 129943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144017, rend_intergenic: 143268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153958, rend_intergenic: 144240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157193, rend_intergenic: 155550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157861, rend_intergenic: 157494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162328, rend_intergenic: 158717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170602, rend_intergenic: 167819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184251, rend_intergenic: 172808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support