-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_2836946-3036354

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.560-T1
Valid prediction for snap_scaffold_8-snap.553-T1
Valid prediction for snap_scaffold_8-snap.532-T1
Valid prediction for snap_scaffold_8-snap.558-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_19440-T1
Valid prediction for snap_scaffold_8-snap.556-T1
Valid prediction for snap_scaffold_8-snap.569-T1
Valid prediction for snap_scaffold_8-snap.524-T1
Valid prediction for snap_scaffold_8-snap.557-T1
Valid prediction for snap_scaffold_8-snap.534-T1
Valid prediction for GlimmerHMM_glimmerT_19445-T1
Valid prediction for snap_scaffold_8-snap.544-T1
Valid prediction for GlimmerHMM_glimmerT_19452-T1
Valid prediction for snap_scaffold_8-snap.545-T1
Valid prediction for GlimmerHMM_glimmerT_19449-T1
Valid prediction for HiQ_model.g12925.t1
Valid prediction for GlimmerHMM_glimmerT_19451-T1
Valid prediction for GlimmerHMM_glimmerT_19441-T1
Valid prediction for snap_scaffold_8-snap.540-T1
Valid prediction for snap_scaffold_8-snap.529-T1
Valid prediction for snap_scaffold_8-snap.554-T1
Valid prediction for snap_scaffold_8-snap.547-T1
Valid prediction for snap_scaffold_8-snap.546-T1
Valid prediction for snap_scaffold_8-snap.542-T1
Valid prediction for GlimmerHMM_glimmerT_19443-T1
Valid prediction for snap_scaffold_8-snap.523-T1
Valid prediction for snap_scaffold_8-snap.551-T1
Valid prediction for GlimmerHMM_glimmerT_19450-T1
Valid prediction for snap_scaffold_8-snap.541-T1
Valid prediction for GlimmerHMM_glimmerT_19444-T1
Valid prediction for Augustus_model.g12934.t1
Valid prediction for snap_scaffold_8-snap.559-T1
Valid prediction for snap_scaffold_8-snap.535-T1
Valid prediction for GlimmerHMM_glimmerT_19447-T1
Valid prediction for GlimmerHMM_glimmerT_19432-T1
Valid prediction for snap_scaffold_8-snap.526-T1
Valid prediction for snap_scaffold_8-snap.539-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19455-T1
Valid prediction for snap_scaffold_8-snap.525-T1
Valid prediction for Augustus_model.g12932.t1
Valid prediction for GlimmerHMM_glimmerT_19442-T1
Valid prediction for Augustus_model.g12927.t1
Valid prediction for GlimmerHMM_glimmerT_19448-T1
Valid prediction for Augustus_model.g12926.t1
Valid prediction for Augustus_model.g12930.t1
Valid prediction for Augustus_model.g12941.t1
Valid prediction for GlimmerHMM_glimmerT_19454-T1
Valid prediction for pasa_asmbl_51723.p1
Valid prediction for snap_scaffold_8-snap.562-T1
Valid prediction for Augustus_model.g12935.t1
Valid prediction for Augustus_model.g12938.t1
Valid prediction for GlimmerHMM_glimmerT_19438-T1
Valid prediction for snap_scaffold_8-snap.548-T1
Valid prediction for GlimmerHMM_glimmerT_19437-T1
Valid prediction for snap_scaffold_8-snap.530-T1
Valid prediction for snap_scaffold_8-snap.552-T1
Valid prediction for CodingQuarry_transcript_59603-T1
Valid prediction for snap_scaffold_8-snap.567-T1
Valid prediction for snap_scaffold_8-snap.555-T1
Valid prediction for snap_scaffold_8-snap.549-T1
Valid prediction for GlimmerHMM_glimmerT_19453-T1
Valid prediction for snap_scaffold_8-snap.561-T1
Valid prediction for Augustus_model.g12937.t1
Valid prediction for GlimmerHMM_glimmerT_19434-T1
Valid prediction for Augustus_model.g12936.t1
Valid prediction for CodingQuarry_transcript_59605-T1
Valid prediction for GlimmerHMM_glimmerT_19435-T1
Valid prediction for snap_scaffold_8-snap.527-T1
Valid prediction for GlimmerHMM_glimmerT_19446-T1
Valid prediction for GlimmerHMM_glimmerT_19433-T1
Valid prediction for snap_scaffold_8-snap.565-T1
Valid prediction for Augustus_model.g12939.t1
Valid prediction for snap_scaffold_8-snap.543-T1
Valid prediction for GlimmerHMM_glimmerT_19436-T1
Valid prediction for snap_scaffold_8-snap.550-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.564-T1
Valid prediction for snap_scaffold_8-snap.568-T1
Valid prediction for snap_scaffold_8-snap.538-T1
Valid prediction for snap_scaffold_8-snap.528-T1
Valid prediction for HiQ_model.g12928.t1
Valid prediction for snap_scaffold_8-snap.537-T1
Valid prediction for GlimmerHMM_glimmerT_19439-T1
Valid prediction for Augustus_model.g12929.t1
Valid prediction for pasa_asmbl_51721.p2
Valid prediction for snap_scaffold_8-snap.536-T1
Valid prediction for CodingQuarry_transcript_59604-T1
Valid prediction for Augustus_model.g12931.t1
Valid prediction for snap_scaffold_8-snap.563-T1
Valid prediction for Augustus_model.g12940.t1
Valid prediction for snap_scaffold_8-snap.566-T1
Valid prediction for Augustus_model.g12933.t1
Valid prediction for snap_scaffold_8-snap.570-T1
Valid prediction for snap_scaffold_8-snap.531-T1
Valid prediction for snap_scaffold_8-snap.533-T1
Valid prediction for pasa_asmbl_51717.p1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18092, rend_intergenic: 16716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22810, rend_intergenic: 19707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34225, rend_intergenic: 31883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37300, rend_intergenic: 34803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54408, rend_intergenic: 46806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76891, rend_intergenic: 61982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81669, rend_intergenic: 76972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101871, rend_intergenic: 81698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107044, rend_intergenic: 102296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114560, rend_intergenic: 109380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115710, rend_intergenic: 115485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120060, rend_intergenic: 115843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126407, rend_intergenic: 120345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148480, rend_intergenic: 126673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194151, rend_intergenic: 191575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 199409
-exon list size: 326


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.5    
9.8    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
22.0    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.5    
34.8    
35.1    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.3    
39.6    
39.9    
40.2    
40.5    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.5    
59.8    
60.1    
60.4    
60.7    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.9    
65.2    
65.5    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.7    
78.0    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 18092, rend_intergenic: 16716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22810, rend_intergenic: 19707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34225, rend_intergenic: 31883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37300, rend_intergenic: 34803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54408, rend_intergenic: 46806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76891, rend_intergenic: 61982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81669, rend_intergenic: 76972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101871, rend_intergenic: 81698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107044, rend_intergenic: 102296  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114560, rend_intergenic: 109380  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115710, rend_intergenic: 115485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120060, rend_intergenic: 115843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126407, rend_intergenic: 120345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148480, rend_intergenic: 126673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194151, rend_intergenic: 191575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support