-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_2312085-2549933

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19399-T1
Valid prediction for snap_scaffold_8-snap.468-T1
Valid prediction for Augustus_model.g12895.t1
Valid prediction for GlimmerHMM_glimmerT_19375-T1
Valid prediction for Augustus_model.g12896.t1
Valid prediction for snap_scaffold_8-snap.473-T1
Valid prediction for GlimmerHMM_glimmerT_19383-T1
Valid prediction for snap_scaffold_8-snap.462-T1
Valid prediction for Augustus_model.g12905.t1
Valid prediction for GlimmerHMM_glimmerT_19390-T1
Valid prediction for GlimmerHMM_glimmerT_19369-T1
Valid prediction for HiQ_model.g12898.t1
Valid prediction for snap_scaffold_8-snap.463-T1
Valid prediction for GlimmerHMM_glimmerT_19386-T1
Valid prediction for GlimmerHMM_glimmerT_19376-T1
Valid prediction for GlimmerHMM_glimmerT_19380-T1
Valid prediction for Augustus_model.g12901.t1
Valid prediction for snap_scaffold_8-snap.445-T1
Valid prediction for snap_scaffold_8-snap.447-T1
Valid prediction for GlimmerHMM_glimmerT_19398-T1
Valid prediction for snap_scaffold_8-snap.467-T1
Valid prediction for Augustus_model.g12903.t1
Valid prediction for snap_scaffold_8-snap.455-T1
Valid prediction for snap_scaffold_8-snap.438-T1
Valid prediction for GlimmerHMM_glimmerT_19372-T1
Valid prediction for snap_scaffold_8-snap.444-T1
Valid prediction for GlimmerHMM_glimmerT_19387-T1
Valid prediction for snap_scaffold_8-snap.460-T1
Valid prediction for snap_scaffold_8-snap.436-T1
Valid prediction for snap_scaffold_8-snap.442-T1
Valid prediction for snap_scaffold_8-snap.440-T1
Valid prediction for snap_scaffold_8-snap.459-T1
Valid prediction for GlimmerHMM_glimmerT_19391-T1
Valid prediction for snap_scaffold_8-snap.443-T1
Valid prediction for GlimmerHMM_glimmerT_19396-T1
Valid prediction for snap_scaffold_8-snap.474-T1
Valid prediction for Augustus_model.g12900.t1
Valid prediction for snap_scaffold_8-snap.453-T1
Valid prediction for snap_scaffold_8-snap.461-T1
Valid prediction for GlimmerHMM_glimmerT_19393-T1
Valid prediction for Augustus_model.g12906.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g12904.t1
Valid prediction for snap_scaffold_8-snap.449-T1
Valid prediction for snap_scaffold_8-snap.466-T1
Valid prediction for snap_scaffold_8-snap.469-T1
Valid prediction for snap_scaffold_8-snap.452-T1
Valid prediction for snap_scaffold_8-snap.437-T1
Valid prediction for Augustus_model.g12897.t1
Valid prediction for GlimmerHMM_glimmerT_19371-T1
Valid prediction for GlimmerHMM_glimmerT_19377-T1
Valid prediction for GlimmerHMM_glimmerT_19385-T1
Valid prediction for GlimmerHMM_glimmerT_19394-T1
Valid prediction for snap_scaffold_8-snap.470-T1
Valid prediction for GlimmerHMM_glimmerT_19397-T1
Valid prediction for snap_scaffold_8-snap.441-T1
Valid prediction for snap_scaffold_8-snap.454-T1
Valid prediction for snap_scaffold_8-snap.451-T1
Valid prediction for snap_scaffold_8-snap.457-T1
Valid prediction for GlimmerHMM_glimmerT_19382-T1
Valid prediction for CodingQuarry_transcript_59599-T1
Valid prediction for GlimmerHMM_glimmerT_19370-T1
Valid prediction for snap_scaffold_8-snap.458-T1
Valid prediction for snap_scaffold_8-snap.448-T1
Valid prediction for GlimmerHMM_glimmerT_19374-T1
Valid prediction for snap_scaffold_8-snap.446-T1
Valid prediction for GlimmerHMM_glimmerT_19378-T1
Valid prediction for Augustus_model.g12902.t1
Valid prediction for snap_scaffold_8-snap.439-T1
Valid prediction for Augustus_model.g12894.t1
Valid prediction for snap_scaffold_8-snap.472-T1
Valid prediction for GlimmerHMM_glimmerT_19395-T1
Valid prediction for GlimmerHMM_glimmerT_19388-T1
Valid prediction for snap_scaffold_8-snap.465-T1
Valid prediction for HiQ_model.g12899.t1
Valid prediction for Augustus_model.g12892.t1
Valid prediction for snap_scaffold_8-snap.471-T1
Valid prediction for GlimmerHMM_glimmerT_19392-T1
Valid prediction for GlimmerHMM_glimmerT_19381-T1
Valid prediction for snap_scaffold_8-snap.450-T1
Valid prediction for GlimmerHMM_glimmerT_19389-T1
Valid prediction for GlimmerHMM_glimmerT_19373-T1
Valid prediction for Augustus_model.g12893.t1
Valid prediction for snap_scaffold_8-snap.464-T1
Couldn't classify 111166, 111236
Sorry, prediction CodingQuarry_transcript_59598-T1 fails validation.
(ATG)	 CC	110899-110932	GT	TAG
(ACC)	 TG	111166-111236	GT	AGG
(CAC)	 AG	111811-111882	GT	AGG
(GCT)	 AG	112265-112348	GA	GAG
-recovered CodingQuarry_transcript_59598-T1, initial, 110899, 110932
-recovered CodingQuarry_transcript_59598-T1, terminal, 112265, 112348
-recovered CodingQuarry_transcript_59598-T1, internal, 111811, 111882
Valid prediction for GlimmerHMM_glimmerT_19384-T1
Valid prediction for GlimmerHMM_glimmerT_19400-T1
Valid prediction for GlimmerHMM_glimmerT_19379-T1
Valid prediction for snap_scaffold_8-snap.456-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5293, rend_intergenic: 5183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12760, rend_intergenic: 5593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27597, rend_intergenic: 20308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56817, rend_intergenic: 30046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67821, rend_intergenic: 62536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77214, rend_intergenic: 75828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102207, rend_intergenic: 98363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117349, rend_intergenic: 108478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120899, rend_intergenic: 118659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146175, rend_intergenic: 135957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207892, rend_intergenic: 157480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229557, rend_intergenic: 208471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 237849
-exon list size: 277


building trellis

0.4    
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9.0    
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10.8    
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15.8    
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17.6    
17.9    
18.3    
18.6    
19.0    
19.4    
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20.1    
20.4    
20.8    
21.1    
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22.6    
22.9    
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23.7    
24.0    
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25.1    
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25.8    
26.2    
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27.2    
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28.0    
28.3    
28.7    
29.0    
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30.1    
30.5    
30.8    
31.2    
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31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.1    
34.4    
34.8    
35.1    
35.5    
35.8    
36.2    
36.6    
36.9    
37.3    
37.6    
38.0    
38.4    
38.7    
39.1    
39.4    
39.8    
40.1    
40.5    
40.9    
41.2    
41.6    
41.9    
42.3    
42.7    
43.0    
43.4    
43.7    
44.1    
44.4    
44.8    
45.2    
45.5    
45.9    
46.2    
46.6    
47.0    
47.3    
47.7    
48.0    
48.4    
48.7    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.3    
51.6    
52.0    
52.3    
52.7    
53.0    
53.4    
53.8    
54.1    
54.5    
54.8    
55.2    
55.6    
55.9    
56.3    
56.6    
57.0    
57.3    
57.7    
58.1    
58.4    
58.8    
59.1    
59.5    
59.9    
60.2    
60.6    
60.9    
61.3    
61.6    
62.0    
62.4    
62.7    
63.1    
63.4    
63.8    
64.2    
64.5    
64.9    
65.2    
65.6    
65.9    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.5    
68.8    
69.2    
69.5    
69.9    
70.3    
70.6    
71.0    
71.3    
71.7    
72.0    
72.4    
72.8    
73.1    
73.5    
73.8    
74.2    
74.6    
74.9    
75.3    
75.6    
76.0    
76.3    
76.7    
77.1    
77.4    
77.8    
78.1    
78.5    
78.9    
79.2    
79.6    
79.9    
80.3    
80.6    
81.0    
81.4    
81.7    
82.1    
82.4    
82.8    
83.2    
83.5    
83.9    
84.2    
84.6    
84.9    
85.3    
85.7    
86.0    
86.4    
86.7    
87.1    
87.5    
87.8    
88.2    
88.5    
88.9    
89.2    
89.6    
90.0    
90.3    
90.7    
91.0    
91.4    
91.8    
92.1    
92.5    
92.8    
93.2    
93.5    
93.9    
94.3    
94.6    
95.0    
95.3    
95.7    
96.1    
96.4    
96.8    
97.1    
97.5    
97.8    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 5293, rend_intergenic: 5183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12760, rend_intergenic: 5593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27597, rend_intergenic: 20308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56817, rend_intergenic: 30046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67821, rend_intergenic: 62536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77214, rend_intergenic: 75828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102207, rend_intergenic: 98363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117349, rend_intergenic: 108478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120899, rend_intergenic: 118659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146175, rend_intergenic: 135957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207892, rend_intergenic: 157480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229557, rend_intergenic: 208471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 226066 - 237849
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support