-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_2130389-2314537

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.423-T1
Valid prediction for snap_scaffold_8-snap.421-T1
Valid prediction for snap_scaffold_8-snap.404-T1
Valid prediction for GlimmerHMM_glimmerT_19347-T1
Valid prediction for snap_scaffold_8-snap.417-T1
Valid prediction for snap_scaffold_8-snap.431-T1
Valid prediction for snap_scaffold_8-snap.422-T1
Valid prediction for GlimmerHMM_glimmerT_19359-T1
Valid prediction for snap_scaffold_8-snap.407-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_19349-T1
Valid prediction for GlimmerHMM_glimmerT_19365-T1
Valid prediction for GlimmerHMM_glimmerT_19354-T1
Valid prediction for snap_scaffold_8-snap.416-T1
Valid prediction for snap_scaffold_8-snap.406-T1
Valid prediction for snap_scaffold_8-snap.418-T1
Valid prediction for snap_scaffold_8-snap.398-T1
Valid prediction for GlimmerHMM_glimmerT_19362-T1
Valid prediction for Augustus_model.g12887.t1
Valid prediction for Augustus_model.g12888.t1
Valid prediction for snap_scaffold_8-snap.410-T1
Valid prediction for Augustus_model.g12886.t1
Valid prediction for snap_scaffold_8-snap.432-T1
Valid prediction for GlimmerHMM_glimmerT_19353-T1
Valid prediction for snap_scaffold_8-snap.399-T1
Valid prediction for snap_scaffold_8-snap.428-T1
Valid prediction for GlimmerHMM_glimmerT_19364-T1
Valid prediction for snap_scaffold_8-snap.433-T1
Valid prediction for GlimmerHMM_glimmerT_19351-T1
Valid prediction for snap_scaffold_8-snap.414-T1
Valid prediction for GlimmerHMM_glimmerT_19352-T1
Valid prediction for GlimmerHMM_glimmerT_19358-T1
Valid prediction for snap_scaffold_8-snap.395-T1
Valid prediction for snap_scaffold_8-snap.413-T1
Valid prediction for snap_scaffold_8-snap.434-T1
Valid prediction for snap_scaffold_8-snap.426-T1
Valid prediction for snap_scaffold_8-snap.412-T1
Valid prediction for GlimmerHMM_glimmerT_19357-T1
Valid prediction for GlimmerHMM_glimmerT_19366-T1
Valid prediction for snap_scaffold_8-snap.420-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.401-T1
Valid prediction for Augustus_model.g12889.t1
Valid prediction for GlimmerHMM_glimmerT_19350-T1
Valid prediction for GlimmerHMM_glimmerT_19356-T1
Valid prediction for snap_scaffold_8-snap.397-T1
Valid prediction for snap_scaffold_8-snap.403-T1
Valid prediction for Augustus_model.g12890.t1
Valid prediction for snap_scaffold_8-snap.430-T1
Valid prediction for snap_scaffold_8-snap.427-T1
Valid prediction for snap_scaffold_8-snap.396-T1
Valid prediction for GlimmerHMM_glimmerT_19355-T1
Valid prediction for GlimmerHMM_glimmerT_19363-T1
Valid prediction for GlimmerHMM_glimmerT_19368-T1
Valid prediction for snap_scaffold_8-snap.408-T1
Valid prediction for snap_scaffold_8-snap.419-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.405-T1
Valid prediction for snap_scaffold_8-snap.425-T1
Valid prediction for GlimmerHMM_glimmerT_19360-T1
Valid prediction for snap_scaffold_8-snap.402-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.411-T1
Valid prediction for snap_scaffold_8-snap.409-T1
Valid prediction for snap_scaffold_8-snap.400-T1
Valid prediction for snap_scaffold_8-snap.415-T1
Valid prediction for GlimmerHMM_glimmerT_19367-T1
Valid prediction for snap_scaffold_8-snap.429-T1
Valid prediction for Augustus_model.g12885.t1
Valid prediction for GlimmerHMM_glimmerT_19348-T1
Valid prediction for snap_scaffold_8-snap.424-T1
Valid prediction for GlimmerHMM_glimmerT_19346-T1
Valid prediction for GlimmerHMM_glimmerT_19361-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13208, rend_intergenic: 7132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20422, rend_intergenic: 17015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39733, rend_intergenic: 36453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46256, rend_intergenic: 44578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49266, rend_intergenic: 46578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57176, rend_intergenic: 49335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68581, rend_intergenic: 62627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72807, rend_intergenic: 70425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74061, rend_intergenic: 72823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100533, rend_intergenic: 98216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110706, rend_intergenic: 100533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122415, rend_intergenic: 116678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133983, rend_intergenic: 128037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138775, rend_intergenic: 134368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146864, rend_intergenic: 141078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178417, rend_intergenic: 158601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 184149
-exon list size: 260


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.7    
3.1    
3.4    
3.8    
4.2    
4.6    
5.0    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.6    
8.0    
8.4    
8.8    
9.2    
9.5    
9.9    
10.3    
10.7    
11.1    
11.5    
11.8    
12.2    
12.6    
13.0    
13.4    
13.7    
14.1    
14.5    
14.9    
15.3    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
17.9    
18.3    
18.7    
19.1    
19.5    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.1    
22.5    
22.9    
23.3    
23.7    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.3    
26.7    
27.1    
27.5    
27.9    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.5    
30.9    
31.3    
31.7    
32.1    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.7    
35.1    
35.5    
35.9    
36.3    
36.6    
37.0    
37.4    
37.8    
38.2    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.8    
41.2    
41.6    
42.0    
42.4    
42.7    
43.1    
43.5    
43.9    
44.3    
44.7    
45.0    
45.4    
45.8    
46.2    
46.6    
46.9    
47.3    
47.7    
48.1    
48.5    
48.9    
49.2    
49.6    
50.0    
50.4    
50.8    
51.1    
51.5    
51.9    
52.3    
52.7    
53.1    
53.4    
53.8    
54.2    
54.6    
55.0    
55.3    
55.7    
56.1    
56.5    
56.9    
57.3    
57.6    
58.0    
58.4    
58.8    
59.2    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.8    
62.2    
62.6    
63.0    
63.4    
63.7    
64.1    
64.5    
64.9    
65.3    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
67.9    
68.3    
68.7    
69.1    
69.5    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.1    
72.5    
72.9    
73.3    
73.7    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.3    
76.7    
77.1    
77.5    
77.9    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.5    
80.9    
81.3    
81.7    
82.1    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.7    
85.1    
85.5    
85.9    
86.3    
86.6    
87.0    
87.4    
87.8    
88.2    
88.5    
88.9    
89.3    
89.7    
90.1    
90.5    
90.8    
91.2    
91.6    
92.0    
92.4    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.0    
95.4    
95.8    
96.2    
96.6    
96.9    
97.3    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 13208, rend_intergenic: 7132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20422, rend_intergenic: 17015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39733, rend_intergenic: 36453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46256, rend_intergenic: 44578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49266, rend_intergenic: 46578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57176, rend_intergenic: 49335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68581, rend_intergenic: 62627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72807, rend_intergenic: 70425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74061, rend_intergenic: 72823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100533, rend_intergenic: 98216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110706, rend_intergenic: 100533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122415, rend_intergenic: 116678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133983, rend_intergenic: 128037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138775, rend_intergenic: 134368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146864, rend_intergenic: 141078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178417, rend_intergenic: 158601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support