-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_1844221-2134931

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_19327-T1
Valid prediction for snap_scaffold_8-snap.376-T1
Valid prediction for snap_scaffold_8-snap.379-T1
Valid prediction for GlimmerHMM_glimmerT_19334-T1
Valid prediction for snap_scaffold_8-snap.340-T1
Valid prediction for snap_scaffold_8-snap.372-T1
Valid prediction for GlimmerHMM_glimmerT_19339-T1
Valid prediction for snap_scaffold_8-snap.367-T1
Valid prediction for snap_scaffold_8-snap.343-T1
Valid prediction for snap_scaffold_8-snap.358-T1
Valid prediction for Augustus_model.g12884.t1
Couldn't classify 128743, 129633
Sorry, prediction pasa_asmbl_52717.p1 fails validation.
(CTG)	 AT	128743-129633	GT	GAG
Valid prediction for GlimmerHMM_glimmerT_19342-T1
Valid prediction for Augustus_model.g12880.t1
Valid prediction for GlimmerHMM_glimmerT_19312-T1
Valid prediction for snap_scaffold_8-snap.348-T1
Valid prediction for GlimmerHMM_glimmerT_19315-T1
Valid prediction for snap_scaffold_8-snap.347-T1
Valid prediction for snap_scaffold_8-snap.346-T1
Valid prediction for snap_scaffold_8-snap.360-T1
Valid prediction for snap_scaffold_8-snap.370-T1
Valid prediction for snap_scaffold_8-snap.364-T1
Valid prediction for GlimmerHMM_glimmerT_19308-T1
Valid prediction for snap_scaffold_8-snap.353-T1
Valid prediction for snap_scaffold_8-snap.375-T1
Valid prediction for Augustus_model.g12877.t1
Valid prediction for snap_scaffold_8-snap.389-T1
Valid prediction for snap_scaffold_8-snap.390-T1
Valid prediction for GlimmerHMM_glimmerT_19326-T1
Valid prediction for snap_scaffold_8-snap.382-T1
Valid prediction for Augustus_model.g12876.t1
Valid prediction for Augustus_model.g12878.t1
Valid prediction for GlimmerHMM_glimmerT_19309-T1
Valid prediction for GlimmerHMM_glimmerT_19345-T1
Valid prediction for GlimmerHMM_glimmerT_19323-T1
Valid prediction for snap_scaffold_8-snap.378-T1
Valid prediction for snap_scaffold_8-snap.361-T1
Valid prediction for GlimmerHMM_glimmerT_19328-T1
Valid prediction for GlimmerHMM_glimmerT_19318-T1
Valid prediction for snap_scaffold_8-snap.369-T1
Valid prediction for GlimmerHMM_glimmerT_19321-T1
Valid prediction for Augustus_model.g12879.t1
Valid prediction for snap_scaffold_8-snap.357-T1
Valid prediction for snap_scaffold_8-snap.351-T1
Valid prediction for snap_scaffold_8-snap.341-T1
Valid prediction for snap_scaffold_8-snap.355-T1
Valid prediction for snap_scaffold_8-snap.354-T1
Valid prediction for snap_scaffold_8-snap.384-T1
Valid prediction for Augustus_model.g12875.t1
Valid prediction for GlimmerHMM_glimmerT_19317-T1
Valid prediction for GlimmerHMM_glimmerT_19330-T1
Valid prediction for GlimmerHMM_glimmerT_19343-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_19341-T1
Valid prediction for GlimmerHMM_glimmerT_19316-T1
Valid prediction for GlimmerHMM_glimmerT_19322-T1
Valid prediction for snap_scaffold_8-snap.386-T1
Valid prediction for GlimmerHMM_glimmerT_19307-T1
Valid prediction for GlimmerHMM_glimmerT_19305-T1
Valid prediction for snap_scaffold_8-snap.374-T1
Valid prediction for snap_scaffold_8-snap.368-T1
Valid prediction for GlimmerHMM_glimmerT_19331-T1
Valid prediction for snap_scaffold_8-snap.362-T1
Valid prediction for GlimmerHMM_glimmerT_19337-T1
Valid prediction for Augustus_model.g12883.t1
Valid prediction for snap_scaffold_8-snap.387-T1
Valid prediction for GlimmerHMM_glimmerT_19338-T1
Valid prediction for GlimmerHMM_glimmerT_19319-T1
Valid prediction for snap_scaffold_8-snap.366-T1
Valid prediction for GlimmerHMM_glimmerT_19332-T1
Valid prediction for GlimmerHMM_glimmerT_19314-T1
Valid prediction for snap_scaffold_8-snap.365-T1
Valid prediction for GlimmerHMM_glimmerT_19311-T1
Valid prediction for snap_scaffold_8-snap.377-T1
Valid prediction for GlimmerHMM_glimmerT_19313-T1
Valid prediction for snap_scaffold_8-snap.350-T1
Valid prediction for snap_scaffold_8-snap.356-T1
Valid prediction for snap_scaffold_8-snap.373-T1
Valid prediction for GlimmerHMM_glimmerT_19336-T1
Valid prediction for snap_scaffold_8-snap.385-T1
Valid prediction for Augustus_model.g12874.t1
Valid prediction for GlimmerHMM_glimmerT_19333-T1
Valid prediction for snap_scaffold_8-snap.380-T1
Valid prediction for GlimmerHMM_glimmerT_19340-T1
Valid prediction for GlimmerHMM_glimmerT_19329-T1
Valid prediction for snap_scaffold_8-snap.344-T1
Valid prediction for GlimmerHMM_glimmerT_19320-T1
Valid prediction for snap_scaffold_8-snap.359-T1
Valid prediction for snap_scaffold_8-snap.352-T1
Valid prediction for GlimmerHMM_glimmerT_19335-T1
Valid prediction for snap_scaffold_8-snap.392-T1
Valid prediction for GlimmerHMM_glimmerT_19324-T1
Valid prediction for snap_scaffold_8-snap.371-T1
Valid prediction for GlimmerHMM_glimmerT_19344-T1
Valid prediction for snap_scaffold_8-snap.349-T1
Valid prediction for snap_scaffold_8-snap.393-T1
Valid prediction for snap_scaffold_8-snap.363-T1
Valid prediction for Augustus_model.g12881.t1
Valid prediction for snap_scaffold_8-snap.391-T1
Valid prediction for GlimmerHMM_glimmerT_19325-T1
Valid prediction for Augustus_model.g12882.t1
Valid prediction for snap_scaffold_8-snap.342-T1
Valid prediction for snap_scaffold_8-snap.381-T1
Valid prediction for snap_scaffold_8-snap.388-T1
Valid prediction for snap_scaffold_8-snap.383-T1
Valid prediction for GlimmerHMM_glimmerT_19306-T1
Valid prediction for GlimmerHMM_glimmerT_19310-T1
Valid prediction for snap_scaffold_8-snap.345-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10196, rend_intergenic: 8270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24841, rend_intergenic: 19093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47274, rend_intergenic: 44998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55166, rend_intergenic: 48333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75903, rend_intergenic: 64425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82114, rend_intergenic: 77034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85122, rend_intergenic: 82802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93385, rend_intergenic: 87305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104904, rend_intergenic: 96226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107030, rend_intergenic: 104989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111461, rend_intergenic: 107073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117189, rend_intergenic: 111682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123652, rend_intergenic: 117817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135497, rend_intergenic: 132374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152025, rend_intergenic: 136219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163793, rend_intergenic: 152048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170161, rend_intergenic: 164212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180322, rend_intergenic: 172962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199692, rend_intergenic: 192488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207351, rend_intergenic: 205129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217043, rend_intergenic: 208760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218086, rend_intergenic: 217105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225048, rend_intergenic: 218213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249190, rend_intergenic: 236300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277723, rend_intergenic: 249213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 290711
-exon list size: 373


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.7    
2.9    
3.2    
3.5    
3.7    
4.0    
4.3    
4.5    
4.8    
5.1    
5.3    
5.6    
5.9    
6.1    
6.4    
6.7    
6.9    
7.2    
7.5    
7.7    
8.0    
8.3    
8.5    
8.8    
9.1    
9.3    
9.6    
9.9    
10.1    
10.4    
10.7    
10.9    
11.2    
11.5    
11.7    
12.0    
12.3    
12.5    
12.8    
13.1    
13.3    
13.6    
13.9    
14.1    
14.4    
14.7    
14.9    
15.2    
15.5    
15.7    
16.0    
16.3    
16.5    
16.8    
17.1    
17.3    
17.6    
17.9    
18.1    
18.4    
18.7    
18.9    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.1    
22.4    
22.7    
22.9    
23.2    
23.5    
23.7    
24.0    
24.3    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.1    
26.4    
26.7    
26.9    
27.2    
27.5    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.3    
29.6    
29.9    
30.1    
30.4    
30.7    
30.9    
31.2    
31.5    
31.7    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.7    
36.0    
36.3    
36.5    
36.8    
37.1    
37.3    
37.6    
37.9    
38.1    
38.4    
38.7    
38.9    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.1    
41.3    
41.6    
41.9    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.7    
44.0    
44.3    
44.5    
44.8    
45.1    
45.3    
45.6    
45.9    
46.1    
46.4    
46.7    
46.9    
47.2    
47.5    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.5    
52.8    
53.1    
53.3    
53.6    
53.9    
54.1    
54.4    
54.7    
54.9    
55.2    
55.5    
55.7    
56.0    
56.3    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.1    
58.4    
58.7    
58.9    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.1    
61.3    
61.6    
61.9    
62.1    
62.4    
62.7    
62.9    
63.2    
63.5    
63.7    
64.0    
64.3    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.3    
68.5    
68.8    
69.1    
69.3    
69.6    
69.9    
70.1    
70.4    
70.7    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.5    
72.8    
73.1    
73.3    
73.6    
73.9    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.7    
76.0    
76.3    
76.5    
76.8    
77.1    
77.3    
77.6    
77.9    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.1    
81.3    
81.6    
81.9    
82.1    
82.4    
82.7    
82.9    
83.2    
83.5    
83.7    
84.0    
84.3    
84.5    
84.8    
85.1    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
86.9    
87.2    
87.5    
87.7    
88.0    
88.3    
88.5    
88.8    
89.1    
89.3    
89.6    
89.9    
90.1    
90.4    
90.7    
90.9    
91.2    
91.5    
91.7    
92.0    
92.3    
92.5    
92.8    
93.1    
93.3    
93.6    
93.9    
94.1    
94.4    
94.7    
94.9    
95.2    
95.5    
95.7    
96.0    
96.3    
96.5    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 50 predictions from path traversal
Error with prediction: snap lend_intergenic: 10196, rend_intergenic: 8270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24841, rend_intergenic: 19093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47274, rend_intergenic: 44998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55166, rend_intergenic: 48333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75903, rend_intergenic: 64425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82114, rend_intergenic: 77034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85122, rend_intergenic: 82802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93385, rend_intergenic: 87305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104904, rend_intergenic: 96226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107030, rend_intergenic: 104989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111461, rend_intergenic: 107073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117189, rend_intergenic: 111682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123652, rend_intergenic: 117817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135497, rend_intergenic: 132374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152025, rend_intergenic: 136219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163793, rend_intergenic: 152048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170161, rend_intergenic: 164212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180322, rend_intergenic: 172962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199692, rend_intergenic: 192488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207351, rend_intergenic: 205129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217043, rend_intergenic: 208760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218086, rend_intergenic: 217105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225048, rend_intergenic: 218213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249190, rend_intergenic: 236300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 277723, rend_intergenic: 249213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support