-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_17102958-17250960

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.3141-T1
Valid prediction for GlimmerHMM_glimmerT_21202-T1
Valid prediction for snap_scaffold_8-snap.3138-T1
Valid prediction for snap_scaffold_8-snap.3133-T1
Valid prediction for GlimmerHMM_glimmerT_21210-T1
Valid prediction for snap_scaffold_8-snap.3144-T1
Valid prediction for GlimmerHMM_glimmerT_21191-T1
Valid prediction for GlimmerHMM_glimmerT_21194-T1
Valid prediction for snap_scaffold_8-snap.3148-T1
Valid prediction for snap_scaffold_8-snap.3158-T1
Valid prediction for GlimmerHMM_glimmerT_21201-T1
Valid prediction for snap_scaffold_8-snap.3164-T1
Valid prediction for GlimmerHMM_glimmerT_21209-T1
Valid prediction for Augustus_model.g14114.t1
Valid prediction for snap_scaffold_8-snap.3155-T1
Valid prediction for GlimmerHMM_glimmerT_21198-T1
Valid prediction for GlimmerHMM_glimmerT_21196-T1
Valid prediction for snap_scaffold_8-snap.3145-T1
Valid prediction for snap_scaffold_8-snap.3154-T1
Valid prediction for snap_scaffold_8-snap.3160-T1
Valid prediction for snap_scaffold_8-snap.3139-T1
Valid prediction for snap_scaffold_8-snap.3134-T1
Valid prediction for snap_scaffold_8-snap.3162-T1
Valid prediction for Augustus_model.g14123.t1
Valid prediction for Augustus_model.g14122.t1
Valid prediction for snap_scaffold_8-snap.3156-T1
Valid prediction for GlimmerHMM_glimmerT_21207-T1
Valid prediction for snap_scaffold_8-snap.3150-T1
Valid prediction for snap_scaffold_8-snap.3136-T1
Valid prediction for snap_scaffold_8-snap.3137-T1
Valid prediction for GlimmerHMM_glimmerT_21200-T1
Valid prediction for snap_scaffold_8-snap.3142-T1
Valid prediction for Augustus_model.g14117.t1
Valid prediction for Augustus_model.g14118.t1
Valid prediction for snap_scaffold_8-snap.3165-T1
Valid prediction for GlimmerHMM_glimmerT_21205-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_21211-T1
Valid prediction for GlimmerHMM_glimmerT_21206-T1
Valid prediction for snap_scaffold_8-snap.3147-T1
Valid prediction for GlimmerHMM_glimmerT_21203-T1
Valid prediction for snap_scaffold_8-snap.3152-T1
Valid prediction for snap_scaffold_8-snap.3153-T1
Valid prediction for Augustus_model.g14115.t1
Valid prediction for GlimmerHMM_glimmerT_21197-T1
Valid prediction for GlimmerHMM_glimmerT_21208-T1
Valid prediction for snap_scaffold_8-snap.3166-T1
Valid prediction for GlimmerHMM_glimmerT_21190-T1
Valid prediction for snap_scaffold_8-snap.3132-T1
Valid prediction for GlimmerHMM_glimmerT_21193-T1
Valid prediction for snap_scaffold_8-snap.3140-T1
Valid prediction for Augustus_model.g14113.t1
Valid prediction for Augustus_model.g14120.t1
Valid prediction for Augustus_model.g14112.t1
Valid prediction for snap_scaffold_8-snap.3159-T1
Valid prediction for snap_scaffold_8-snap.3149-T1
Valid prediction for snap_scaffold_8-snap.3161-T1
Valid prediction for Augustus_model.g14116.t1
Valid prediction for snap_scaffold_8-snap.3151-T1
Valid prediction for snap_scaffold_8-snap.3143-T1
Valid prediction for GlimmerHMM_glimmerT_21204-T1
Valid prediction for Augustus_model.g14121.t1
Valid prediction for snap_scaffold_8-snap.3135-T1
Valid prediction for snap_scaffold_8-snap.3163-T1
Valid prediction for snap_scaffold_8-snap.3146-T1
Valid prediction for snap_scaffold_8-snap.3157-T1
Valid prediction for Augustus_model.g14119.t1
Valid prediction for GlimmerHMM_glimmerT_21192-T1
Valid prediction for snap_scaffold_8-snap.3131-T1
Valid prediction for GlimmerHMM_glimmerT_21199-T1
Valid prediction for GlimmerHMM_glimmerT_21212-T1
Valid prediction for GlimmerHMM_glimmerT_21195-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19747, rend_intergenic: 13847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44130, rend_intergenic: 41360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54087, rend_intergenic: 48550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57904, rend_intergenic: 55223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63498, rend_intergenic: 63312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103007, rend_intergenic: 91629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117056, rend_intergenic: 113346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126783, rend_intergenic: 121050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129612, rend_intergenic: 127968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 148003
-exon list size: 223


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.7    
3.1    
3.6    
4.0    
4.4    
4.9    
5.3    
5.8    
6.2    
6.7    
7.1    
7.6    
8.0    
8.4    
8.9    
9.3    
9.8    
10.2    
10.7    
11.1    
11.6    
12.0    
12.4    
12.9    
13.3    
13.8    
14.2    
14.7    
15.1    
15.6    
16.0    
16.4    
16.9    
17.3    
17.8    
18.2    
18.7    
19.1    
19.6    
20.0    
20.4    
20.9    
21.3    
21.8    
22.2    
22.7    
23.1    
23.6    
24.0    
24.4    
24.9    
25.3    
25.8    
26.2    
26.7    
27.1    
27.6    
28.0    
28.4    
28.9    
29.3    
29.8    
30.2    
30.7    
31.1    
31.6    
32.0    
32.4    
32.9    
33.3    
33.8    
34.2    
34.7    
35.1    
35.6    
36.0    
36.4    
36.9    
37.3    
37.8    
38.2    
38.7    
39.1    
39.6    
40.0    
40.4    
40.9    
41.3    
41.8    
42.2    
42.7    
43.1    
43.6    
44.0    
44.4    
44.9    
45.3    
45.8    
46.2    
46.7    
47.1    
47.6    
48.0    
48.4    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.6    
52.0    
52.4    
52.9    
53.3    
53.8    
54.2    
54.7    
55.1    
55.6    
56.0    
56.4    
56.9    
57.3    
57.8    
58.2    
58.7    
59.1    
59.6    
60.0    
60.4    
60.9    
61.3    
61.8    
62.2    
62.7    
63.1    
63.6    
64.0    
64.4    
64.9    
65.3    
65.8    
66.2    
66.7    
67.1    
67.6    
68.0    
68.4    
68.9    
69.3    
69.8    
70.2    
70.7    
71.1    
71.6    
72.0    
72.4    
72.9    
73.3    
73.8    
74.2    
74.7    
75.1    
75.6    
76.0    
76.4    
76.9    
77.3    
77.8    
78.2    
78.7    
79.1    
79.6    
80.0    
80.4    
80.9    
81.3    
81.8    
82.2    
82.7    
83.1    
83.6    
84.0    
84.4    
84.9    
85.3    
85.8    
86.2    
86.7    
87.1    
87.6    
88.0    
88.4    
88.9    
89.3    
89.8    
90.2    
90.7    
91.1    
91.6    
92.0    
92.4    
92.9    
93.3    
93.8    
94.2    
94.7    
95.1    
95.6    
96.0    
96.4    
96.9    
97.3    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 19747, rend_intergenic: 13847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44130, rend_intergenic: 41360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54087, rend_intergenic: 48550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57904, rend_intergenic: 55223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63498, rend_intergenic: 63312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103007, rend_intergenic: 91629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117056, rend_intergenic: 113346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126783, rend_intergenic: 121050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129612, rend_intergenic: 127968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support