-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_16970409-17107195

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.3109-T1
Valid prediction for Augustus_model.g14099.t1
Valid prediction for snap_scaffold_8-snap.3111-T1
Valid prediction for GlimmerHMM_glimmerT_21186-T1
Valid prediction for GlimmerHMM_glimmerT_21175-T1
Valid prediction for GlimmerHMM_glimmerT_21185-T1
Valid prediction for Augustus_model.g14107.t1
Valid prediction for Augustus_model.g14106.t1
Valid prediction for snap_scaffold_8-snap.3118-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.3121-T1
Valid prediction for GlimmerHMM_glimmerT_21183-T1
Valid prediction for snap_scaffold_8-snap.3101-T1
Valid prediction for snap_scaffold_8-snap.3128-T1
Valid prediction for GlimmerHMM_glimmerT_21174-T1
Valid prediction for GlimmerHMM_glimmerT_21168-T1
Valid prediction for Augustus_model.g14102.t1
Valid prediction for snap_scaffold_8-snap.3113-T1
Valid prediction for snap_scaffold_8-snap.3115-T1
Valid prediction for snap_scaffold_8-snap.3107-T1
Valid prediction for Augustus_model.g14108.t1
Valid prediction for GlimmerHMM_glimmerT_21172-T1
Valid prediction for GlimmerHMM_glimmerT_21179-T1
Valid prediction for Augustus_model.g14110.t1
Valid prediction for snap_scaffold_8-snap.3112-T1
Valid prediction for Augustus_model.g14104.t1
Valid prediction for snap_scaffold_8-snap.3102-T1
Valid prediction for GlimmerHMM_glimmerT_21176-T1
Valid prediction for GlimmerHMM_glimmerT_21182-T1
Valid prediction for snap_scaffold_8-snap.3103-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_21181-T1
Valid prediction for snap_scaffold_8-snap.3108-T1
Valid prediction for snap_scaffold_8-snap.3127-T1
Valid prediction for snap_scaffold_8-snap.3125-T1
Valid prediction for snap_scaffold_8-snap.3116-T1
Valid prediction for GlimmerHMM_glimmerT_21177-T1
Valid prediction for snap_scaffold_8-snap.3104-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.3114-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.3117-T1
Valid prediction for snap_scaffold_8-snap.3120-T1
Valid prediction for snap_scaffold_8-snap.3129-T1
Valid prediction for snap_scaffold_8-snap.3124-T1
Valid prediction for Augustus_model.g14098.t1
Valid prediction for snap_scaffold_8-snap.3105-T1
Valid prediction for Augustus_model.g14100.t1
Valid prediction for snap_scaffold_8-snap.3122-T1
Valid prediction for Augustus_model.g14105.t1
Valid prediction for snap_scaffold_8-snap.3097-T1
Valid prediction for snap_scaffold_8-snap.3099-T1
Valid prediction for snap_scaffold_8-snap.3110-T1
Valid prediction for GlimmerHMM_glimmerT_21189-T1
Valid prediction for snap_scaffold_8-snap.3098-T1
Valid prediction for GlimmerHMM_glimmerT_21171-T1
Valid prediction for Augustus_model.g14111.t1
Valid prediction for Augustus_model.g14103.t1
Valid prediction for snap_scaffold_8-snap.3130-T1
Valid prediction for Augustus_model.g14109.t1
Valid prediction for GlimmerHMM_glimmerT_21169-T1
Valid prediction for GlimmerHMM_glimmerT_21184-T1
Valid prediction for GlimmerHMM_glimmerT_21187-T1
Valid prediction for snap_scaffold_8-snap.3119-T1
Valid prediction for snap_scaffold_8-snap.3126-T1
Valid prediction for Augustus_model.g14101.t1
Valid prediction for Augustus_model.g14112.t1
Valid prediction for snap_scaffold_8-snap.3106-T1
Valid prediction for GlimmerHMM_glimmerT_21180-T1
Valid prediction for GlimmerHMM_glimmerT_21178-T1
Valid prediction for GlimmerHMM_glimmerT_21170-T1
Valid prediction for snap_scaffold_8-snap.3123-T1
Valid prediction for snap_scaffold_8-snap.3100-T1
Valid prediction for GlimmerHMM_glimmerT_21188-T1
Valid prediction for GlimmerHMM_glimmerT_21173-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27689, rend_intergenic: 11839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32652, rend_intergenic: 30021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49197, rend_intergenic: 38465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49426, rend_intergenic: 49238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75457, rend_intergenic: 51301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110915, rend_intergenic: 107740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118505, rend_intergenic: 115357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122421, rend_intergenic: 120710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132549, rend_intergenic: 123373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 136787
-exon list size: 300


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.6    
3.0    
3.3    
3.6    
4.0    
4.3    
4.6    
5.0    
5.3    
5.6    
6.0    
6.3    
6.6    
7.0    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.3    
9.6    
9.9    
10.3    
10.6    
10.9    
11.3    
11.6    
11.9    
12.3    
12.6    
12.9    
13.2    
13.6    
13.9    
14.2    
14.6    
14.9    
15.2    
15.6    
15.9    
16.2    
16.6    
16.9    
17.2    
17.5    
17.9    
18.2    
18.5    
18.9    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.5    
21.9    
22.2    
22.5    
22.8    
23.2    
23.5    
23.8    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.2    
26.5    
26.8    
27.2    
27.5    
27.8    
28.1    
28.5    
28.8    
29.1    
29.5    
29.8    
30.1    
30.5    
30.8    
31.1    
31.5    
31.8    
32.1    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.8    
35.1    
35.4    
35.8    
36.1    
36.4    
36.8    
37.1    
37.4    
37.7    
38.1    
38.4    
38.7    
39.1    
39.4    
39.7    
40.1    
40.4    
40.7    
41.1    
41.4    
41.7    
42.1    
42.4    
42.7    
43.0    
43.4    
43.7    
44.0    
44.4    
44.7    
45.0    
45.4    
45.7    
46.0    
46.4    
46.7    
47.0    
47.4    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.6    
53.0    
53.3    
53.6    
54.0    
54.3    
54.6    
55.0    
55.3    
55.6    
56.0    
56.3    
56.6    
57.0    
57.3    
57.6    
57.9    
58.3    
58.6    
58.9    
59.3    
59.6    
59.9    
60.3    
60.6    
60.9    
61.3    
61.6    
61.9    
62.3    
62.6    
62.9    
63.2    
63.6    
63.9    
64.2    
64.6    
64.9    
65.2    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.9    
68.2    
68.5    
68.9    
69.2    
69.5    
69.9    
70.2    
70.5    
70.9    
71.2    
71.5    
71.9    
72.2    
72.5    
72.8    
73.2    
73.5    
73.8    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.2    
76.5    
76.8    
77.2    
77.5    
77.8    
78.1    
78.5    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.1    
81.5    
81.8    
82.1    
82.5    
82.8    
83.1    
83.4    
83.8    
84.1    
84.4    
84.8    
85.1    
85.4    
85.8    
86.1    
86.4    
86.8    
87.1    
87.4    
87.7    
88.1    
88.4    
88.7    
89.1    
89.4    
89.7    
90.1    
90.4    
90.7    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.0    
93.4    
93.7    
94.0    
94.4    
94.7    
95.0    
95.4    
95.7    
96.0    
96.4    
96.7    
97.0    
97.4    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 27689, rend_intergenic: 11839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32652, rend_intergenic: 30021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49197, rend_intergenic: 38465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49426, rend_intergenic: 49238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75457, rend_intergenic: 51301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110915, rend_intergenic: 107740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118505, rend_intergenic: 115357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122421, rend_intergenic: 120710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132549, rend_intergenic: 123373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support