-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_16749137-16974339

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.3063-T1
Valid prediction for snap_scaffold_8-snap.3052-T1
Valid prediction for GlimmerHMM_glimmerT_21142-T1
Valid prediction for GlimmerHMM_glimmerT_21164-T1
Valid prediction for snap_scaffold_8-snap.3072-T1
Valid prediction for snap_scaffold_8-snap.3092-T1
Valid prediction for snap_scaffold_8-snap.3055-T1
Valid prediction for snap_scaffold_8-snap.3066-T1
Valid prediction for snap_scaffold_8-snap.3058-T1
Valid prediction for Augustus_model.g14097.t1
Valid prediction for snap_scaffold_8-snap.3095-T1
Valid prediction for GlimmerHMM_glimmerT_21163-T1
Valid prediction for snap_scaffold_8-snap.3078-T1
Valid prediction for snap_scaffold_8-snap.3059-T1
Valid prediction for snap_scaffold_8-snap.3089-T1
Valid prediction for Augustus_model.g14094.t1
Valid prediction for GlimmerHMM_glimmerT_21157-T1
Valid prediction for snap_scaffold_8-snap.3075-T1
Valid prediction for snap_scaffold_8-snap.3088-T1
Valid prediction for GlimmerHMM_glimmerT_21139-T1
Valid prediction for GlimmerHMM_glimmerT_21146-T1
Valid prediction for Augustus_model.g14078.t1
Valid prediction for snap_scaffold_8-snap.3094-T1
Valid prediction for snap_scaffold_8-snap.3087-T1
Valid prediction for Augustus_model.g14095.t1
Valid prediction for GlimmerHMM_glimmerT_21154-T1
Valid prediction for snap_scaffold_8-snap.3068-T1
Valid prediction for Augustus_model.g14080.t1
Valid prediction for GlimmerHMM_glimmerT_21147-T1
Valid prediction for GlimmerHMM_glimmerT_21166-T1
Valid prediction for snap_scaffold_8-snap.3062-T1
Valid prediction for snap_scaffold_8-snap.3074-T1
Valid prediction for GlimmerHMM_glimmerT_21161-T1
Valid prediction for GlimmerHMM_glimmerT_21159-T1
Valid prediction for snap_scaffold_8-snap.3086-T1
Valid prediction for Augustus_model.g14088.t1
Valid prediction for snap_scaffold_8-snap.3054-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.3060-T1
Valid prediction for snap_scaffold_8-snap.3053-T1
Couldn't classify 71975, 72712
Sorry, prediction pasa_asmbl_52435.p1 fails validation.
(GCA)	 AA	71975-72712	AA	AAA
Valid prediction for GlimmerHMM_glimmerT_21150-T1
Valid prediction for GlimmerHMM_glimmerT_21167-T1
Valid prediction for snap_scaffold_8-snap.3096-T1
Valid prediction for GlimmerHMM_glimmerT_21162-T1
Valid prediction for GlimmerHMM_glimmerT_21153-T1
Valid prediction for GlimmerHMM_glimmerT_21143-T1
Valid prediction for Augustus_model.g14075.t1
Valid prediction for Augustus_model.g14090.t1
Valid prediction for Augustus_model.g14093.t1
Valid prediction for GlimmerHMM_glimmerT_21145-T1
Valid prediction for snap_scaffold_8-snap.3077-T1
Valid prediction for snap_scaffold_8-snap.3061-T1
Valid prediction for Augustus_model.g14092.t1
Valid prediction for snap_scaffold_8-snap.3067-T1
Valid prediction for snap_scaffold_8-snap.3057-T1
Valid prediction for snap_scaffold_8-snap.3069-T1
Valid prediction for snap_scaffold_8-snap.3070-T1
Valid prediction for Augustus_model.g14091.t1
Valid prediction for snap_scaffold_8-snap.3091-T1
Valid prediction for snap_scaffold_8-snap.3083-T1
Valid prediction for GlimmerHMM_glimmerT_21158-T1
Valid prediction for snap_scaffold_8-snap.3051-T1
Valid prediction for snap_scaffold_8-snap.3073-T1
Valid prediction for GlimmerHMM_glimmerT_21155-T1
Valid prediction for GlimmerHMM_glimmerT_21152-T1
Valid prediction for Augustus_model.g14079.t1
Valid prediction for Augustus_model.g14084.t1
Valid prediction for GlimmerHMM_glimmerT_21141-T1
Valid prediction for Augustus_model.g14083.t1
Valid prediction for GlimmerHMM_glimmerT_21156-T1
Valid prediction for GlimmerHMM_glimmerT_21149-T1
Valid prediction for snap_scaffold_8-snap.3085-T1
Valid prediction for GlimmerHMM_glimmerT_21138-T1
Valid prediction for snap_scaffold_8-snap.3084-T1
Valid prediction for Augustus_model.g14086.t1
Valid prediction for Augustus_model.g14096.t1
Valid prediction for Augustus_model.g14077.t1
Valid prediction for GlimmerHMM_glimmerT_21140-T1
Valid prediction for snap_scaffold_8-snap.3093-T1
Valid prediction for GlimmerHMM_glimmerT_21148-T1
Valid prediction for Augustus_model.g14085.t1
Valid prediction for snap_scaffold_8-snap.3090-T1
Valid prediction for Augustus_model.g14076.t1
Valid prediction for GlimmerHMM_glimmerT_21160-T1
Valid prediction for GlimmerHMM_glimmerT_21151-T1
Valid prediction for GlimmerHMM_glimmerT_21144-T1
Valid prediction for snap_scaffold_8-snap.3065-T1
Valid prediction for GlimmerHMM_glimmerT_21165-T1
Valid prediction for snap_scaffold_8-snap.3079-T1
Valid prediction for Augustus_model.g14089.t1
Valid prediction for Augustus_model.g14081.t1
Valid prediction for snap_scaffold_8-snap.3082-T1
Valid prediction for snap_scaffold_8-snap.3076-T1
Valid prediction for snap_scaffold_8-snap.3097-T1
Valid prediction for snap_scaffold_8-snap.3080-T1
Valid prediction for Augustus_model.g14087.t1
Valid prediction for snap_scaffold_8-snap.3081-T1
Valid prediction for Augustus_model.g14098.t1
Valid prediction for Augustus_model.g14074.t1
Valid prediction for snap_scaffold_8-snap.3071-T1
Valid prediction for snap_scaffold_8-snap.3056-T1
Valid prediction for snap_scaffold_8-snap.3064-T1
Valid prediction for Augustus_model.g14082.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8143, rend_intergenic: 6218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19107, rend_intergenic: 8230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38766, rend_intergenic: 19155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53480, rend_intergenic: 42830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57768, rend_intergenic: 54032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64668, rend_intergenic: 59734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70424, rend_intergenic: 65171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94187, rend_intergenic: 89951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105862, rend_intergenic: 104800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120356, rend_intergenic: 107943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139411, rend_intergenic: 138939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183460, rend_intergenic: 180903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196837, rend_intergenic: 193604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216235, rend_intergenic: 209507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221272, rend_intergenic: 217363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 225203
-exon list size: 428


building trellis

0.2    
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1.2    
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3.7    
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10.0    
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13.0    
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13.5    
13.7    
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14.9    
15.1    
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15.8    
16.0    
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16.7    
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18.8    
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19.8    
20.0    
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22.8    
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23.7    
24.0    
24.2    
24.4    
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24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.3    
26.5    
26.7    
27.0    
27.2    
27.4    
27.7    
27.9    
28.1    
28.4    
28.6    
28.8    
29.1    
29.3    
29.5    
29.8    
30.0    
30.2    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.9    
32.1    
32.3    
32.6    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.4    
34.7    
34.9    
35.1    
35.3    
35.6    
35.8    
36.0    
36.3    
36.5    
36.7    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
40.9    
41.2    
41.4    
41.6    
41.9    
42.1    
42.3    
42.6    
42.8    
43.0    
43.3    
43.5    
43.7    
44.0    
44.2    
44.4    
44.7    
44.9    
45.1    
45.3    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
47.0    
47.2    
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47.7    
47.9    
48.1    
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48.6    
48.8    
49.1    
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49.8    
50.0    
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50.9    
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52.1    
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52.6    
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53.0    
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56.5    
56.7    
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75.6    
75.8    
76.0    
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77.0    
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80.0    
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82.6    
82.8    
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84.0    
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84.9    
85.1    
85.3    
85.6    
85.8    
86.0    
86.3    
86.5    
86.7    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.4    
88.6    
88.8    
89.1    
89.3    
89.5    
89.8    
90.0    
90.2    
90.5    
90.7    
90.9    
91.2    
91.4    
91.6    
91.9    
92.1    
92.3    
92.6    
92.8    
93.0    
93.3    
93.5    
93.7    
94.0    
94.2    
94.4    
94.7    
94.9    
95.1    
95.3    
95.6    
95.8    
96.0    
96.3    
96.5    
96.7    
97.0    
97.2    
97.4    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 41 predictions from path traversal
Error with prediction: snap lend_intergenic: 8143, rend_intergenic: 6218  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19107, rend_intergenic: 8230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38766, rend_intergenic: 19155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53480, rend_intergenic: 42830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57768, rend_intergenic: 54032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64668, rend_intergenic: 59734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70424, rend_intergenic: 65171  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94187, rend_intergenic: 89951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105862, rend_intergenic: 104800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120356, rend_intergenic: 107943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139411, rend_intergenic: 138939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183460, rend_intergenic: 180903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196837, rend_intergenic: 193604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216235, rend_intergenic: 209507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 221272, rend_intergenic: 217363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support