-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_15839190-16035165

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_21041-T1
Valid prediction for snap_scaffold_8-snap.2892-T1
Valid prediction for GlimmerHMM_glimmerT_21022-T1
Valid prediction for Augustus_model.g13980.t1
Valid prediction for snap_scaffold_8-snap.2894-T1
Valid prediction for snap_scaffold_8-snap.2883-T1
Valid prediction for GlimmerHMM_glimmerT_21029-T1
Valid prediction for Augustus_model.g13982.t1
Valid prediction for snap_scaffold_8-snap.2888-T1
Valid prediction for snap_scaffold_8-snap.2908-T1
Valid prediction for GlimmerHMM_glimmerT_21033-T1
Valid prediction for GlimmerHMM_glimmerT_21035-T1
Valid prediction for GlimmerHMM_glimmerT_21037-T1
Valid prediction for GlimmerHMM_glimmerT_21027-T1
Valid prediction for snap_scaffold_8-snap.2902-T1
Valid prediction for GlimmerHMM_glimmerT_21034-T1
Valid prediction for GlimmerHMM_glimmerT_21025-T1
Valid prediction for snap_scaffold_8-snap.2898-T1
Valid prediction for Augustus_model.g13984.t1
Valid prediction for snap_scaffold_8-snap.2885-T1
Valid prediction for GlimmerHMM_glimmerT_21042-T1
Valid prediction for snap_scaffold_8-snap.2887-T1
Valid prediction for snap_scaffold_8-snap.2899-T1
Valid prediction for GlimmerHMM_glimmerT_21026-T1
Valid prediction for snap_scaffold_8-snap.2891-T1
Valid prediction for snap_scaffold_8-snap.2897-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g13992.t1
Valid prediction for Augustus_model.g13988.t1
Valid prediction for snap_scaffold_8-snap.2889-T1
Valid prediction for snap_scaffold_8-snap.2904-T1
Valid prediction for Augustus_model.g13986.t1
Valid prediction for GlimmerHMM_glimmerT_21021-T1
Valid prediction for GlimmerHMM_glimmerT_21020-T1
Couldn't classify 22900, 23001
Couldn't classify 29732, 29878
Sorry, prediction pasa_asmbl_52348.p1 fails validation.
(GTG)	 AT	22900-23001	GT	AGG
(CTG)	 AG	23441-23656	GT	AGG
(CTG)	 AG	24263-24362	GT	AGG
(ATG)	 AG	24610-24654	GT	AGG
(CCC)	 AG	25215-25399	GT	AGG
(CTA)	 AG	26235-26344	GT	AGG
(TGA)	 AG	26825-26894	GT	TGG
(CCC)	 AG	28193-28270	GT	AGG
(ATC)	 AG	29432-29572	GT	AGG
(GTC)	 AG	29732-29878	AG	TGA
-recovered pasa_asmbl_52348.p1, initial, 24610, 24654
-recovered pasa_asmbl_52348.p1, internal, 23441, 23656
-recovered pasa_asmbl_52348.p1, internal, 24263, 24362
-recovered pasa_asmbl_52348.p1, internal, 24610, 24654
-recovered pasa_asmbl_52348.p1, internal, 25215, 25399
-recovered pasa_asmbl_52348.p1, internal, 26235, 26344
-recovered pasa_asmbl_52348.p1, internal, 26825, 26894
-recovered pasa_asmbl_52348.p1, internal, 28193, 28270
-recovered pasa_asmbl_52348.p1, internal, 29432, 29572
Valid prediction for Augustus_model.g13990.t1
Valid prediction for snap_scaffold_8-snap.2893-T1
Valid prediction for snap_scaffold_8-snap.2884-T1
Valid prediction for snap_scaffold_8-snap.2906-T1
Valid prediction for snap_scaffold_8-snap.2905-T1
Valid prediction for snap_scaffold_8-snap.2882-T1
Valid prediction for snap_scaffold_8-snap.2895-T1
Couldn't classify 61827, 61845
Couldn't classify 65240, 65513
Sorry, prediction pasa_asmbl_52346.p1 fails validation.
(GAG)	 GT	61827-61845	GT	AGG
(CCG)	 AG	62677-62733	GT	CAG
(ATT)	 AG	63536-63609	GT	AGG
(AGT)	 AG	64209-64357	GT	GGG
(AGA)	 AG	65240-65513	AA	GGA
-recovered pasa_asmbl_52346.p1, internal, 62677, 62733
-recovered pasa_asmbl_52346.p1, internal, 63536, 63609
-recovered pasa_asmbl_52346.p1, internal, 64209, 64357
Valid prediction for GlimmerHMM_glimmerT_21028-T1
Valid prediction for GlimmerHMM_glimmerT_21032-T1
Valid prediction for snap_scaffold_8-snap.2886-T1
Valid prediction for GlimmerHMM_glimmerT_21039-T1
Valid prediction for HiQ_model.g13987.t1
Valid prediction for snap_scaffold_8-snap.2909-T1
Valid prediction for snap_scaffold_8-snap.2903-T1
Valid prediction for HiQ_model.g13991.t1
Valid prediction for snap_scaffold_8-snap.2896-T1
Valid prediction for snap_scaffold_8-snap.2907-T1
Valid prediction for Augustus_model.g13985.t1
Valid prediction for GlimmerHMM_glimmerT_21024-T1
Valid prediction for GlimmerHMM_glimmerT_21030-T1
Valid prediction for snap_scaffold_8-snap.2910-T1
Valid prediction for snap_scaffold_8-snap.2900-T1
Couldn't classify 36586, 36765
Sorry, prediction pasa_asmbl_52347.p1 fails validation.
(AGC)	 CC	36586-36765	GT	AGG
(GCT)	 AG	38206-38247	GT	AGG
(ATG)	 AG	38426-38537	GT	AGG
(AGT)	 AG	38875-39114	GT	AGG
(GCC)	 AG	39399-39485	GT	AGG
(GAA)	 AG	39650-39684	GG	GAG
-recovered pasa_asmbl_52347.p1, initial, 38426, 38537
-recovered pasa_asmbl_52347.p1, terminal, 39399, 39485
-recovered pasa_asmbl_52347.p1, terminal, 39650, 39684
-recovered pasa_asmbl_52347.p1, internal, 38206, 38247
-recovered pasa_asmbl_52347.p1, internal, 38426, 38537
-recovered pasa_asmbl_52347.p1, internal, 38875, 39114
-recovered pasa_asmbl_52347.p1, internal, 39399, 39485
Valid prediction for Augustus_model.g13983.t1
Valid prediction for Augustus_model.g13981.t1
Valid prediction for GlimmerHMM_glimmerT_21040-T1
Valid prediction for GlimmerHMM_glimmerT_21036-T1
Couldn't classify 14984, 16287
Couldn't classify 18925, 19069
Sorry, prediction pasa_asmbl_52349.p1 fails validation.
(AGG)	 GC	14984-16287	GT	AGG
(GGA)	 AG	18925-19069	GG	TGG
Valid prediction for snap_scaffold_8-snap.2890-T1
Valid prediction for GlimmerHMM_glimmerT_21038-T1
Valid prediction for GlimmerHMM_glimmerT_21023-T1
Valid prediction for GlimmerHMM_glimmerT_21031-T1
Valid prediction for snap_scaffold_8-snap.2901-T1
Valid prediction for Augustus_model.g13989.t1
Valid prediction for snap_scaffold_8-snap.2881-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12776, rend_intergenic: 9443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59491, rend_intergenic: 58329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122168, rend_intergenic: 116620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175848, rend_intergenic: 166118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 195976
-exon list size: 260


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.7    
3.1    
3.4    
3.8    
4.2    
4.6    
5.0    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.6    
8.0    
8.4    
8.8    
9.2    
9.5    
9.9    
10.3    
10.7    
11.1    
11.5    
11.8    
12.2    
12.6    
13.0    
13.4    
13.7    
14.1    
14.5    
14.9    
15.3    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
17.9    
18.3    
18.7    
19.1    
19.5    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.1    
22.5    
22.9    
23.3    
23.7    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.3    
26.7    
27.1    
27.5    
27.9    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.5    
30.9    
31.3    
31.7    
32.1    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.7    
35.1    
35.5    
35.9    
36.3    
36.6    
37.0    
37.4    
37.8    
38.2    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.8    
41.2    
41.6    
42.0    
42.4    
42.7    
43.1    
43.5    
43.9    
44.3    
44.7    
45.0    
45.4    
45.8    
46.2    
46.6    
46.9    
47.3    
47.7    
48.1    
48.5    
48.9    
49.2    
49.6    
50.0    
50.4    
50.8    
51.1    
51.5    
51.9    
52.3    
52.7    
53.1    
53.4    
53.8    
54.2    
54.6    
55.0    
55.3    
55.7    
56.1    
56.5    
56.9    
57.3    
57.6    
58.0    
58.4    
58.8    
59.2    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.8    
62.2    
62.6    
63.0    
63.4    
63.7    
64.1    
64.5    
64.9    
65.3    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
67.9    
68.3    
68.7    
69.1    
69.5    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.1    
72.5    
72.9    
73.3    
73.7    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.3    
76.7    
77.1    
77.5    
77.9    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.5    
80.9    
81.3    
81.7    
82.1    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.7    
85.1    
85.5    
85.9    
86.3    
86.6    
87.0    
87.4    
87.8    
88.2    
88.5    
88.9    
89.3    
89.7    
90.1    
90.5    
90.8    
91.2    
91.6    
92.0    
92.4    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.0    
95.4    
95.8    
96.2    
96.6    
96.9    
97.3    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 12776, rend_intergenic: 9443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59491, rend_intergenic: 58329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122168, rend_intergenic: 116620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175848, rend_intergenic: 166118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 182513 - 195976
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support