-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_15500892-15658194

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2847-T1
Valid prediction for GlimmerHMM_glimmerT_20978-T1
Valid prediction for snap_scaffold_8-snap.2842-T1
Valid prediction for snap_scaffold_8-snap.2826-T1
Valid prediction for snap_scaffold_8-snap.2815-T1
Valid prediction for snap_scaffold_8-snap.2830-T1
Valid prediction for snap_scaffold_8-snap.2845-T1
Valid prediction for Augustus_model.g13955.t1
Valid prediction for snap_scaffold_8-snap.2822-T1
Valid prediction for Augustus_model.g13958.t1
Valid prediction for GlimmerHMM_glimmerT_20965-T1
Valid prediction for snap_scaffold_8-snap.2806-T1
Valid prediction for snap_scaffold_8-snap.2836-T1
Valid prediction for Augustus_model.g13957.t1
Valid prediction for snap_scaffold_8-snap.2821-T1
Valid prediction for snap_scaffold_8-snap.2848-T1
Valid prediction for snap_scaffold_8-snap.2839-T1
Valid prediction for Augustus_model.g13956.t1
Valid prediction for GlimmerHMM_glimmerT_20983-T1
Valid prediction for GlimmerHMM_glimmerT_20969-T1
Valid prediction for Augustus_model.g13960.t1
Couldn't classify 72656, 72782
Sorry, prediction pasa_asmbl_53409.p2 fails validation.
(AGG)	 GC	72656-72782	GT	GGG
(GCT)	 AG	74300-74455	GC	CGG
(GCA)	 AG	75692-75750	CC	AAC
-recovered pasa_asmbl_53409.p2, terminal, 75692, 75750
-recovered pasa_asmbl_53409.p2, internal, 74300, 74455
Valid prediction for GlimmerHMM_glimmerT_20968-T1
Valid prediction for snap_scaffold_8-snap.2834-T1
Valid prediction for snap_scaffold_8-snap.2808-T1
Valid prediction for GlimmerHMM_glimmerT_20971-T1
Valid prediction for snap_scaffold_8-snap.2829-T1
Valid prediction for snap_scaffold_8-snap.2813-T1
Valid prediction for GlimmerHMM_glimmerT_20963-T1
Valid prediction for Augustus_model.g13962.t1
Valid prediction for snap_scaffold_8-snap.2840-T1
Valid prediction for snap_scaffold_8-snap.2814-T1
Valid prediction for snap_scaffold_8-snap.2807-T1
Valid prediction for Augustus_model.g13954.t1
Valid prediction for snap_scaffold_8-snap.2809-T1
Valid prediction for snap_scaffold_8-snap.2824-T1
Valid prediction for snap_scaffold_8-snap.2843-T1
Valid prediction for GlimmerHMM_glimmerT_20976-T1
Valid prediction for Augustus_model.g13959.t1
Valid prediction for GlimmerHMM_glimmerT_20966-T1
Valid prediction for GlimmerHMM_glimmerT_20973-T1
Valid prediction for Augustus_model.g13952.t1
Valid prediction for GlimmerHMM_glimmerT_20977-T1
Valid prediction for snap_scaffold_8-snap.2825-T1
Valid prediction for Augustus_model.g13951.t1
Valid prediction for snap_scaffold_8-snap.2819-T1
Valid prediction for GlimmerHMM_glimmerT_20962-T1
Valid prediction for snap_scaffold_8-snap.2833-T1
Valid prediction for snap_scaffold_8-snap.2817-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2844-T1
Valid prediction for GlimmerHMM_glimmerT_20974-T1
Valid prediction for Augustus_model.g13963.t1
Valid prediction for GlimmerHMM_glimmerT_20975-T1
Valid prediction for snap_scaffold_8-snap.2835-T1
Valid prediction for snap_scaffold_8-snap.2823-T1
Valid prediction for GlimmerHMM_glimmerT_20981-T1
Valid prediction for snap_scaffold_8-snap.2812-T1
Valid prediction for snap_scaffold_8-snap.2810-T1
Valid prediction for snap_scaffold_8-snap.2816-T1
Valid prediction for snap_scaffold_8-snap.2832-T1
Valid prediction for snap_scaffold_8-snap.2827-T1
Valid prediction for Augustus_model.g13961.t1
Valid prediction for GlimmerHMM_glimmerT_20984-T1
Valid prediction for snap_scaffold_8-snap.2820-T1
Valid prediction for snap_scaffold_8-snap.2828-T1
Valid prediction for snap_scaffold_8-snap.2838-T1
Valid prediction for GlimmerHMM_glimmerT_20985-T1
Valid prediction for snap_scaffold_8-snap.2818-T1
Valid prediction for GlimmerHMM_glimmerT_20972-T1
Valid prediction for GlimmerHMM_glimmerT_20967-T1
Valid prediction for GlimmerHMM_glimmerT_20970-T1
Valid prediction for Augustus_model.g13953.t1
Valid prediction for snap_scaffold_8-snap.2831-T1
Valid prediction for GlimmerHMM_glimmerT_20964-T1
Valid prediction for GlimmerHMM_glimmerT_20982-T1
Valid prediction for GlimmerHMM_glimmerT_20980-T1
Valid prediction for snap_scaffold_8-snap.2837-T1
Valid prediction for snap_scaffold_8-snap.2841-T1
Valid prediction for snap_scaffold_8-snap.2811-T1
Valid prediction for snap_scaffold_8-snap.2846-T1
Valid prediction for GlimmerHMM_glimmerT_20979-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15790, rend_intergenic: 12877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24917, rend_intergenic: 21091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35646, rend_intergenic: 29317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41590, rend_intergenic: 37366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42198, rend_intergenic: 41831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47080, rend_intergenic: 43230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52619, rend_intergenic: 47091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55968, rend_intergenic: 53281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103422, rend_intergenic: 100874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115005, rend_intergenic: 110907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143946, rend_intergenic: 138549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 157303
-exon list size: 281


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.1    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.6    
11.0    
11.3    
11.7    
12.0    
12.4    
12.7    
13.1    
13.4    
13.8    
14.1    
14.5    
14.8    
15.2    
15.5    
15.9    
16.3    
16.6    
17.0    
17.3    
17.7    
18.0    
18.4    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.6    
21.9    
22.3    
22.6    
23.0    
23.3    
23.7    
24.0    
24.4    
24.7    
25.1    
25.4    
25.8    
26.1    
26.5    
26.9    
27.2    
27.6    
27.9    
28.3    
28.6    
29.0    
29.3    
29.7    
30.0    
30.4    
30.7    
31.1    
31.4    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
35.0    
35.3    
35.7    
36.0    
36.4    
36.7    
37.1    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.8    
43.1    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.9    
57.2    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.9    
63.3    
63.6    
64.0    
64.3    
64.7    
65.0    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.6    
68.9    
69.3    
69.6    
70.0    
70.3    
70.7    
71.0    
71.4    
71.7    
72.1    
72.4    
72.8    
73.1    
73.5    
73.9    
74.2    
74.6    
74.9    
75.3    
75.6    
76.0    
76.3    
76.7    
77.0    
77.4    
77.7    
78.1    
78.4    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.6    
82.0    
82.3    
82.7    
83.0    
83.4    
83.7    
84.1    
84.5    
84.8    
85.2    
85.5    
85.9    
86.2    
86.6    
86.9    
87.3    
87.6    
88.0    
88.3    
88.7    
89.0    
89.4    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.9    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 15790, rend_intergenic: 12877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24917, rend_intergenic: 21091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35646, rend_intergenic: 29317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41590, rend_intergenic: 37366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42198, rend_intergenic: 41831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47080, rend_intergenic: 43230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52619, rend_intergenic: 47091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55968, rend_intergenic: 53281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103422, rend_intergenic: 100874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115005, rend_intergenic: 110907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143946, rend_intergenic: 138549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support