-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_15346864-15502479

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2774-T1
Valid prediction for Augustus_model.g13936.t1
Valid prediction for GlimmerHMM_glimmerT_20949-T1
Valid prediction for snap_scaffold_8-snap.2781-T1
Valid prediction for snap_scaffold_8-snap.2803-T1
Valid prediction for GlimmerHMM_glimmerT_20961-T1
Valid prediction for Augustus_model.g13948.t1
Valid prediction for snap_scaffold_8-snap.2769-T1
Valid prediction for GlimmerHMM_glimmerT_20947-T1
Valid prediction for snap_scaffold_8-snap.2787-T1
Valid prediction for snap_scaffold_8-snap.2777-T1
Valid prediction for snap_scaffold_8-snap.2791-T1
Valid prediction for snap_scaffold_8-snap.2789-T1
Valid prediction for Augustus_model.g13943.t1
Valid prediction for snap_scaffold_8-snap.2793-T1
Valid prediction for Augustus_model.g13945.t1
Valid prediction for GlimmerHMM_glimmerT_20959-T1
Valid prediction for GlimmerHMM_glimmerT_20958-T1
Valid prediction for snap_scaffold_8-snap.2798-T1
Valid prediction for snap_scaffold_8-snap.2772-T1
Valid prediction for snap_scaffold_8-snap.2780-T1
Valid prediction for GlimmerHMM_glimmerT_20956-T1
Valid prediction for snap_scaffold_8-snap.2783-T1
Couldn't classify 66868, 67068
Couldn't classify 67741, 67882
Sorry, prediction pasa_asmbl_53658.p1 fails validation.
(GAG)	 AA	66868-67068	GT	AGG
(CTC)	 AG	67422-67555	GT	AGG
(CGT)	 AG	67741-67882	GG	CAG
-recovered pasa_asmbl_53658.p1, internal, 67422, 67555
Valid prediction for snap_scaffold_8-snap.2786-T1
Valid prediction for Augustus_model.g13938.t1
Valid prediction for snap_scaffold_8-snap.2795-T1
Couldn't classify 60228, 60266
Couldn't classify 62287, 62301
Sorry, prediction pasa_asmbl_53405.p1 fails validation.
(CCT)	 GG	60228-60266	GT	ATG
(GTG)	 AG	61311-61391	GT	AGG
(GAC)	 AG	61513-61662	GT	CGG
(GAG)	 AG	61879-61980	GT	AGG
(CAA)	 AG	62287-62301	GT	AGG
-recovered pasa_asmbl_53405.p1, internal, 61311, 61391
-recovered pasa_asmbl_53405.p1, internal, 61513, 61662
-recovered pasa_asmbl_53405.p1, internal, 61879, 61980
-recovered pasa_asmbl_53405.p1, internal, 62287, 62301
Valid prediction for Augustus_model.g13949.t1
Couldn't classify 62284, 62452
Couldn't classify 64593, 64802
Sorry, prediction pasa_asmbl_53406.p1 fails validation.
(CAG)	 AG	62284-62452	GT	AGG
(AGA)	 AG	62902-63101	GT	TGG
(GGT)	 AG	63392-63580	GT	AGG
(GTG)	 AG	63665-63782	GT	AGG
(GAC)	 AG	64083-64177	GT	AGG
(GAG)	 AG	64593-64802	GA	CCG
-recovered pasa_asmbl_53406.p1, internal, 62284, 62452
-recovered pasa_asmbl_53406.p1, internal, 62902, 63101
-recovered pasa_asmbl_53406.p1, internal, 63392, 63580
-recovered pasa_asmbl_53406.p1, internal, 63665, 63782
-recovered pasa_asmbl_53406.p1, internal, 64083, 64177
Valid prediction for GlimmerHMM_glimmerT_20944-T1
Valid prediction for snap_scaffold_8-snap.2768-T1
Valid prediction for Augustus_model.g13944.t1
Valid prediction for GlimmerHMM_glimmerT_20941-T1
Couldn't classify 53441, 53758
Sorry, prediction pasa_asmbl_53404.p1 fails validation.
(AGG)	 AC	53441-53758	GG	GAG
Valid prediction for snap_scaffold_8-snap.2782-T1
Valid prediction for Augustus_model.g13946.t1
Valid prediction for GlimmerHMM_glimmerT_20951-T1
Valid prediction for Augustus_model.g13941.t1
Valid prediction for Augustus_model.g13950.t1
Valid prediction for Augustus_model.g13942.t1
Valid prediction for Augustus_model.g13937.t1
Valid prediction for snap_scaffold_8-snap.2776-T1
Valid prediction for snap_scaffold_8-snap.2799-T1
Valid prediction for snap_scaffold_8-snap.2801-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20948-T1
Valid prediction for snap_scaffold_8-snap.2794-T1
Valid prediction for snap_scaffold_8-snap.2788-T1
Valid prediction for snap_scaffold_8-snap.2770-T1
Valid prediction for Augustus_model.g13947.t1
Valid prediction for GlimmerHMM_glimmerT_20942-T1
Valid prediction for snap_scaffold_8-snap.2784-T1
Valid prediction for GlimmerHMM_glimmerT_20953-T1
Valid prediction for snap_scaffold_8-snap.2802-T1
Valid prediction for snap_scaffold_8-snap.2790-T1
Valid prediction for GlimmerHMM_glimmerT_20952-T1
Valid prediction for snap_scaffold_8-snap.2800-T1
Valid prediction for snap_scaffold_8-snap.2796-T1
Valid prediction for snap_scaffold_8-snap.2792-T1
Valid prediction for snap_scaffold_8-snap.2785-T1
Valid prediction for snap_scaffold_8-snap.2771-T1
Valid prediction for snap_scaffold_8-snap.2779-T1
Valid prediction for snap_scaffold_8-snap.2773-T1
Valid prediction for snap_scaffold_8-snap.2804-T1
Valid prediction for snap_scaffold_8-snap.2805-T1
Valid prediction for snap_scaffold_8-snap.2775-T1
Valid prediction for GlimmerHMM_glimmerT_20950-T1
Valid prediction for GlimmerHMM_glimmerT_20955-T1
Valid prediction for GlimmerHMM_glimmerT_20960-T1
Valid prediction for snap_scaffold_8-snap.2778-T1
Valid prediction for GlimmerHMM_glimmerT_20945-T1
Valid prediction for GlimmerHMM_glimmerT_20954-T1
Valid prediction for GlimmerHMM_glimmerT_20946-T1
Valid prediction for GlimmerHMM_glimmerT_20957-T1
Valid prediction for GlimmerHMM_glimmerT_20943-T1
Valid prediction for snap_scaffold_8-snap.2797-T1
Valid prediction for Augustus_model.g13940.t1
Valid prediction for Augustus_model.g13939.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17100, rend_intergenic: 11592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21661, rend_intergenic: 18512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22380, rend_intergenic: 22071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24838, rend_intergenic: 23960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49124, rend_intergenic: 38690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71058, rend_intergenic: 61144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94652, rend_intergenic: 91908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98140, rend_intergenic: 95009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108535, rend_intergenic: 106333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116114, rend_intergenic: 111784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124522, rend_intergenic: 117670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130533, rend_intergenic: 125097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136522, rend_intergenic: 131835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143954, rend_intergenic: 138960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152643, rend_intergenic: 147332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 155616
-exon list size: 295


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.4    
2.7    
3.0    
3.4    
3.7    
4.0    
4.4    
4.7    
5.1    
5.4    
5.7    
6.1    
6.4    
6.7    
7.1    
7.4    
7.7    
8.1    
8.4    
8.8    
9.1    
9.4    
9.8    
10.1    
10.4    
10.8    
11.1    
11.4    
11.8    
12.1    
12.5    
12.8    
13.1    
13.5    
13.8    
14.1    
14.5    
14.8    
15.2    
15.5    
15.8    
16.2    
16.5    
16.8    
17.2    
17.5    
17.8    
18.2    
18.5    
18.9    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.5    
21.9    
22.2    
22.6    
22.9    
23.2    
23.6    
23.9    
24.2    
24.6    
24.9    
25.3    
25.6    
25.9    
26.3    
26.6    
26.9    
27.3    
27.6    
27.9    
28.3    
28.6    
29.0    
29.3    
29.6    
30.0    
30.3    
30.6    
31.0    
31.3    
31.6    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.4    
35.7    
36.0    
36.4    
36.7    
37.0    
37.4    
37.7    
38.0    
38.4    
38.7    
39.1    
39.4    
39.7    
40.1    
40.4    
40.7    
41.1    
41.4    
41.8    
42.1    
42.4    
42.8    
43.1    
43.4    
43.8    
44.1    
44.4    
44.8    
45.1    
45.5    
45.8    
46.1    
46.5    
46.8    
47.1    
47.5    
47.8    
48.1    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.9    
52.2    
52.5    
52.9    
53.2    
53.5    
53.9    
54.2    
54.5    
54.9    
55.2    
55.6    
55.9    
56.2    
56.6    
56.9    
57.2    
57.6    
57.9    
58.2    
58.6    
58.9    
59.3    
59.6    
59.9    
60.3    
60.6    
60.9    
61.3    
61.6    
62.0    
62.3    
62.6    
63.0    
63.3    
63.6    
64.0    
64.3    
64.6    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.4    
68.7    
69.0    
69.4    
69.7    
70.0    
70.4    
70.7    
71.0    
71.4    
71.7    
72.1    
72.4    
72.7    
73.1    
73.4    
73.7    
74.1    
74.4    
74.7    
75.1    
75.4    
75.8    
76.1    
76.4    
76.8    
77.1    
77.4    
77.8    
78.1    
78.5    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.1    
81.5    
81.8    
82.2    
82.5    
82.8    
83.2    
83.5    
83.8    
84.2    
84.5    
84.8    
85.2    
85.5    
85.9    
86.2    
86.5    
86.9    
87.2    
87.5    
87.9    
88.2    
88.6    
88.9    
89.2    
89.6    
89.9    
90.2    
90.6    
90.9    
91.2    
91.6    
91.9    
92.3    
92.6    
92.9    
93.3    
93.6    
93.9    
94.3    
94.6    
94.9    
95.3    
95.6    
96.0    
96.3    
96.6    
97.0    
97.3    
97.6    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 17100, rend_intergenic: 11592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21661, rend_intergenic: 18512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22380, rend_intergenic: 22071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24838, rend_intergenic: 23960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49124, rend_intergenic: 38690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71058, rend_intergenic: 61144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94652, rend_intergenic: 91908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98140, rend_intergenic: 95009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108535, rend_intergenic: 106333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116114, rend_intergenic: 111784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124522, rend_intergenic: 117670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130533, rend_intergenic: 125097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136522, rend_intergenic: 131835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143954, rend_intergenic: 138960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152643, rend_intergenic: 147332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support