-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_14773954-15117334

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2702-T1
Valid prediction for snap_scaffold_8-snap.2714-T1
Valid prediction for Augustus_model.g13908.t1
Valid prediction for snap_scaffold_8-snap.2709-T1
Valid prediction for snap_scaffold_8-snap.2717-T1
Valid prediction for GlimmerHMM_glimmerT_20893-T1
Valid prediction for snap_scaffold_8-snap.2698-T1
Valid prediction for GlimmerHMM_glimmerT_20900-T1
Valid prediction for GlimmerHMM_glimmerT_20888-T1
Valid prediction for snap_scaffold_8-snap.2719-T1
Valid prediction for snap_scaffold_8-snap.2724-T1
Valid prediction for snap_scaffold_8-snap.2712-T1
Valid prediction for GlimmerHMM_glimmerT_20899-T1
Valid prediction for GlimmerHMM_glimmerT_20877-T1
Valid prediction for snap_scaffold_8-snap.2711-T1
Valid prediction for snap_scaffold_8-snap.2723-T1
Valid prediction for snap_scaffold_8-snap.2716-T1
Valid prediction for GlimmerHMM_glimmerT_20876-T1
Valid prediction for GlimmerHMM_glimmerT_20880-T1
Valid prediction for GlimmerHMM_glimmerT_20878-T1
Valid prediction for snap_scaffold_8-snap.2718-T1
Valid prediction for Augustus_model.g13906.t1
Valid prediction for snap_scaffold_8-snap.2701-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20882-T1
Valid prediction for GlimmerHMM_glimmerT_20889-T1
Valid prediction for snap_scaffold_8-snap.2700-T1
Valid prediction for GlimmerHMM_glimmerT_20895-T1
Valid prediction for GlimmerHMM_glimmerT_20894-T1
Valid prediction for Augustus_model.g13903.t1
Valid prediction for snap_scaffold_8-snap.2691-T1
Valid prediction for Augustus_model.g13905.t1
Valid prediction for GlimmerHMM_glimmerT_20874-T1
Valid prediction for snap_scaffold_8-snap.2710-T1
Valid prediction for snap_scaffold_8-snap.2692-T1
Valid prediction for snap_scaffold_8-snap.2706-T1
Valid prediction for GlimmerHMM_glimmerT_20881-T1
Valid prediction for snap_scaffold_8-snap.2721-T1
Valid prediction for snap_scaffold_8-snap.2715-T1
Valid prediction for snap_scaffold_8-snap.2707-T1
Valid prediction for GlimmerHMM_glimmerT_20884-T1
Valid prediction for snap_scaffold_8-snap.2705-T1
Valid prediction for snap_scaffold_8-snap.2722-T1
Valid prediction for GlimmerHMM_glimmerT_20896-T1
Valid prediction for GlimmerHMM_glimmerT_20879-T1
Valid prediction for snap_scaffold_8-snap.2694-T1
Valid prediction for snap_scaffold_8-snap.2703-T1
Valid prediction for snap_scaffold_8-snap.2695-T1
Couldn't classify 184577, 184802
Sorry, prediction pasa_asmbl_52320.p1 fails validation.
(CGG)	 CC	184577-184802	GT	GGG
(CGA)	 AG	185348-185844	CA	AAC
-recovered pasa_asmbl_52320.p1, terminal, 185348, 185844
Valid prediction for snap_scaffold_8-snap.2713-T1
Valid prediction for snap_scaffold_8-snap.2708-T1
Valid prediction for Augustus_model.g13907.t1
Valid prediction for Augustus_model.g13904.t1
Valid prediction for snap_scaffold_8-snap.2699-T1
Valid prediction for snap_scaffold_8-snap.2720-T1
Valid prediction for GlimmerHMM_glimmerT_20885-T1
Valid prediction for GlimmerHMM_glimmerT_20892-T1
Valid prediction for snap_scaffold_8-snap.2704-T1
Valid prediction for GlimmerHMM_glimmerT_20891-T1
Valid prediction for GlimmerHMM_glimmerT_20875-T1
Valid prediction for Augustus_model.g13902.t1
Valid prediction for GlimmerHMM_glimmerT_20883-T1
Valid prediction for GlimmerHMM_glimmerT_20887-T1
Valid prediction for GlimmerHMM_glimmerT_20898-T1
Couldn't classify 174048, 174132
Couldn't classify 179274, 179315
Sorry, prediction pasa_asmbl_52624.p1 fails validation.
(GGT)	 GG	174048-174132	GT	GAG
(GTG)	 AG	176169-176356	GT	AGG
(CCC)	 AG	179274-179315	GA	TGG
-recovered pasa_asmbl_52624.p1, internal, 176169, 176356
Couldn't classify 181032, 181148
Sorry, prediction pasa_asmbl_52321.p1 fails validation.
(ATG)	 AC	179757-179889	GT	TGG
(GGG)	 AG	180689-180810	GT	AAG
(CTG)	 AG	181032-181148	GG	GAG
-recovered pasa_asmbl_52321.p1, initial, 179757, 179889
-recovered pasa_asmbl_52321.p1, internal, 180689, 180810
Valid prediction for GlimmerHMM_glimmerT_20886-T1
Valid prediction for GlimmerHMM_glimmerT_20890-T1
Valid prediction for snap_scaffold_8-snap.2696-T1
Valid prediction for snap_scaffold_8-snap.2697-T1
Valid prediction for GlimmerHMM_glimmerT_20897-T1
Valid prediction for snap_scaffold_8-snap.2693-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 39413, rend_intergenic: 36893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167202, rend_intergenic: 160438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 343381
-exon list size: 199


building trellis

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81.1    
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88.1    
88.6    
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90.0    
90.5    
91.0    
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95.0    
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96.0    
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97.0    
97.5    
98.0    
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99.0    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 39413, rend_intergenic: 36893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167202, rend_intergenic: 160438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11559
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support