-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_1424244-1617219

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g12860.t1
Valid prediction for snap_scaffold_8-snap.269-T1
Valid prediction for snap_scaffold_8-snap.277-T1
Valid prediction for GlimmerHMM_glimmerT_19266-T1
Valid prediction for Augustus_model.g12856.t1
Valid prediction for Augustus_model.g12849.t1
Valid prediction for Augustus_model.g12851.t1
Valid prediction for Augustus_model.g12861.t1
Valid prediction for snap_scaffold_8-snap.263-T1
Valid prediction for snap_scaffold_8-snap.266-T1
Couldn't classify 30950, 31036
Couldn't classify 34082, 34238
Sorry, prediction pasa_asmbl_53644.p1 fails validation.
(TCC)	 AG	30950-31036	GT	ACG
(GTG)	 AG	33415-33599	GT	CAG
(TGT)	 AG	34082-34238	GT	AGG
-recovered pasa_asmbl_53644.p1, internal, 30950, 31036
-recovered pasa_asmbl_53644.p1, internal, 33415, 33599
-recovered pasa_asmbl_53644.p1, internal, 34082, 34238
Valid prediction for snap_scaffold_8-snap.275-T1
Valid prediction for GlimmerHMM_glimmerT_19267-T1
Valid prediction for Augustus_model.g12850.t1
Valid prediction for GlimmerHMM_glimmerT_19259-T1
Valid prediction for snap_scaffold_8-snap.265-T1
Valid prediction for snap_scaffold_8-snap.286-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.272-T1
Valid prediction for Augustus_model.g12857.t1
Valid prediction for snap_scaffold_8-snap.288-T1
Valid prediction for GlimmerHMM_glimmerT_19260-T1
Valid prediction for snap_scaffold_8-snap.282-T1
Valid prediction for snap_scaffold_8-snap.279-T1
Valid prediction for GlimmerHMM_glimmerT_19268-T1
Couldn't classify 40984, 41081
Couldn't classify 41442, 41658
Sorry, prediction pasa_asmbl_52702.p1 fails validation.
(GAG)	 TG	40984-41081	GT	AGG
(CAT)	 AG	41442-41658	AG	CCA
Valid prediction for GlimmerHMM_glimmerT_19270-T1
Valid prediction for Augustus_model.g12855.t1
Valid prediction for snap_scaffold_8-snap.293-T1
Valid prediction for snap_scaffold_8-snap.284-T1
Valid prediction for Augustus_model.g12858.t1
Valid prediction for GlimmerHMM_glimmerT_19258-T1
Valid prediction for Augustus_model.g12853.t1
Valid prediction for GlimmerHMM_glimmerT_19264-T1
Valid prediction for snap_scaffold_8-snap.278-T1
Valid prediction for GlimmerHMM_glimmerT_19257-T1
Valid prediction for Augustus_model.g12854.t1
Valid prediction for snap_scaffold_8-snap.270-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g12859.t1
Valid prediction for snap_scaffold_8-snap.274-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.261-T1
Valid prediction for snap_scaffold_8-snap.289-T1
Valid prediction for GlimmerHMM_glimmerT_19271-T1
Valid prediction for snap_scaffold_8-snap.281-T1
Valid prediction for snap_scaffold_8-snap.283-T1
Valid prediction for snap_scaffold_8-snap.291-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for HiQ_model.g12862.t1
Valid prediction for GlimmerHMM_glimmerT_19269-T1
Valid prediction for snap_scaffold_8-snap.285-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_8-snap.267-T1
Valid prediction for snap_scaffold_8-snap.273-T1
Valid prediction for GlimmerHMM_glimmerT_19276-T1
Valid prediction for GlimmerHMM_glimmerT_19275-T1
Valid prediction for GlimmerHMM_glimmerT_19263-T1
Valid prediction for snap_scaffold_8-snap.276-T1
Valid prediction for GlimmerHMM_glimmerT_19265-T1
Valid prediction for snap_scaffold_8-snap.262-T1
Valid prediction for GlimmerHMM_glimmerT_19256-T1
Valid prediction for snap_scaffold_8-snap.292-T1
Valid prediction for snap_scaffold_8-snap.268-T1
Valid prediction for snap_scaffold_8-snap.294-T1
Valid prediction for snap_scaffold_8-snap.287-T1
Valid prediction for GlimmerHMM_glimmerT_19261-T1
Valid prediction for snap_scaffold_8-snap.271-T1
Valid prediction for snap_scaffold_8-snap.264-T1
Valid prediction for GlimmerHMM_glimmerT_19274-T1
Valid prediction for GlimmerHMM_glimmerT_19262-T1
Valid prediction for GlimmerHMM_glimmerT_19273-T1
Couldn't classify 147858, 148196
Sorry, prediction pasa_asmbl_52703.p1 fails validation.
(ACC)	 TC	147858-148196	GG	GGG
Valid prediction for snap_scaffold_8-snap.280-T1
Valid prediction for GlimmerHMM_glimmerT_19272-T1
Valid prediction for CodingQuarry_transcript_59595-T1
Valid prediction for snap_scaffold_8-snap.290-T1
Valid prediction for GlimmerHMM_glimmerT_19277-T1
Valid prediction for Augustus_model.g12852.t1
Valid prediction for snap_scaffold_8-snap.260-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17748, rend_intergenic: 16292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21961, rend_intergenic: 19363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31029, rend_intergenic: 22175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38348, rend_intergenic: 32401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45911, rend_intergenic: 38427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65410, rend_intergenic: 55227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66397, rend_intergenic: 66255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77892, rend_intergenic: 66824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86332, rend_intergenic: 84167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117442, rend_intergenic: 86340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132431, rend_intergenic: 125253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141727, rend_intergenic: 137342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145043, rend_intergenic: 144237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145968, rend_intergenic: 145567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153267, rend_intergenic: 150204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183158, rend_intergenic: 179068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188938, rend_intergenic: 183494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 192976
-exon list size: 287


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.8    
3.1    
3.5    
3.8    
4.2    
4.5    
4.8    
5.2    
5.5    
5.9    
6.2    
6.6    
6.9    
7.3    
7.6    
8.0    
8.3    
8.7    
9.0    
9.3    
9.7    
10.0    
10.4    
10.7    
11.1    
11.4    
11.8    
12.1    
12.5    
12.8    
13.1    
13.5    
13.8    
14.2    
14.5    
14.9    
15.2    
15.6    
15.9    
16.3    
16.6    
17.0    
17.3    
17.6    
18.0    
18.3    
18.7    
19.0    
19.4    
19.7    
20.1    
20.4    
20.8    
21.1    
21.5    
21.8    
22.1    
22.5    
22.8    
23.2    
23.5    
23.9    
24.2    
24.6    
24.9    
25.3    
25.6    
26.0    
26.3    
26.6    
27.0    
27.3    
27.7    
28.0    
28.4    
28.7    
29.1    
29.4    
29.8    
30.1    
30.4    
30.8    
31.1    
31.5    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
34.9    
35.3    
35.6    
36.0    
36.3    
36.7    
37.0    
37.4    
37.7    
38.1    
38.4    
38.8    
39.1    
39.4    
39.8    
40.1    
40.5    
40.8    
41.2    
41.5    
41.9    
42.2    
42.6    
42.9    
43.3    
43.6    
43.9    
44.3    
44.6    
45.0    
45.3    
45.7    
46.0    
46.4    
46.7    
47.1    
47.4    
47.8    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.2    
52.6    
52.9    
53.3    
53.6    
54.0    
54.3    
54.7    
55.0    
55.4    
55.7    
56.1    
56.4    
56.7    
57.1    
57.4    
57.8    
58.1    
58.5    
58.8    
59.2    
59.5    
59.9    
60.2    
60.6    
60.9    
61.2    
61.6    
61.9    
62.3    
62.6    
63.0    
63.3    
63.7    
64.0    
64.4    
64.7    
65.1    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.5    
68.9    
69.2    
69.6    
69.9    
70.2    
70.6    
70.9    
71.3    
71.6    
72.0    
72.3    
72.7    
73.0    
73.4    
73.7    
74.0    
74.4    
74.7    
75.1    
75.4    
75.8    
76.1    
76.5    
76.8    
77.2    
77.5    
77.9    
78.2    
78.5    
78.9    
79.2    
79.6    
79.9    
80.3    
80.6    
81.0    
81.3    
81.7    
82.0    
82.4    
82.7    
83.0    
83.4    
83.7    
84.1    
84.4    
84.8    
85.1    
85.5    
85.8    
86.2    
86.5    
86.9    
87.2    
87.5    
87.9    
88.2    
88.6    
88.9    
89.3    
89.6    
90.0    
90.3    
90.7    
91.0    
91.3    
91.7    
92.0    
92.4    
92.7    
93.1    
93.4    
93.8    
94.1    
94.5    
94.8    
95.2    
95.5    
95.8    
96.2    
96.5    
96.9    
97.2    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 17748, rend_intergenic: 16292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21961, rend_intergenic: 19363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31029, rend_intergenic: 22175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38348, rend_intergenic: 32401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45911, rend_intergenic: 38427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65410, rend_intergenic: 55227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66397, rend_intergenic: 66255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77892, rend_intergenic: 66824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86332, rend_intergenic: 84167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117442, rend_intergenic: 86340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132431, rend_intergenic: 125253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141727, rend_intergenic: 137342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145043, rend_intergenic: 144237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145968, rend_intergenic: 145567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153267, rend_intergenic: 150204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183158, rend_intergenic: 179068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188938, rend_intergenic: 183494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support