-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_13813505-14082233

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2519-T1
Valid prediction for GlimmerHMM_glimmerT_20795-T1
Valid prediction for snap_scaffold_8-snap.2510-T1
Valid prediction for GlimmerHMM_glimmerT_20781-T1
Valid prediction for Augustus_model.g13861.t1
Valid prediction for snap_scaffold_8-snap.2513-T1
Valid prediction for snap_scaffold_8-snap.2516-T1
Valid prediction for snap_scaffold_8-snap.2557-T1
Valid prediction for GlimmerHMM_glimmerT_20783-T1
Valid prediction for snap_scaffold_8-snap.2515-T1
Valid prediction for snap_scaffold_8-snap.2550-T1
Valid prediction for GlimmerHMM_glimmerT_20784-T1
Valid prediction for snap_scaffold_8-snap.2541-T1
Valid prediction for Augustus_model.g13862.t1
Valid prediction for GlimmerHMM_glimmerT_20780-T1
Valid prediction for snap_scaffold_8-snap.2547-T1
Valid prediction for GlimmerHMM_glimmerT_20786-T1
Valid prediction for GlimmerHMM_glimmerT_20788-T1
Valid prediction for GlimmerHMM_glimmerT_20770-T1
Valid prediction for snap_scaffold_8-snap.2528-T1
Valid prediction for snap_scaffold_8-snap.2559-T1
Valid prediction for GlimmerHMM_glimmerT_20792-T1
Valid prediction for GlimmerHMM_glimmerT_20793-T1
Valid prediction for GlimmerHMM_glimmerT_20794-T1
Valid prediction for snap_scaffold_8-snap.2555-T1
Valid prediction for snap_scaffold_8-snap.2531-T1
Valid prediction for snap_scaffold_8-snap.2526-T1
Valid prediction for snap_scaffold_8-snap.2544-T1
Valid prediction for snap_scaffold_8-snap.2536-T1
Valid prediction for Augustus_model.g13855.t1
Valid prediction for snap_scaffold_8-snap.2518-T1
Valid prediction for GlimmerHMM_glimmerT_20776-T1
Valid prediction for GlimmerHMM_glimmerT_20790-T1
Valid prediction for GlimmerHMM_glimmerT_20789-T1
Valid prediction for GlimmerHMM_glimmerT_20779-T1
Valid prediction for snap_scaffold_8-snap.2554-T1
Valid prediction for GlimmerHMM_glimmerT_20777-T1
Valid prediction for snap_scaffold_8-snap.2525-T1
Valid prediction for snap_scaffold_8-snap.2538-T1
Valid prediction for snap_scaffold_8-snap.2530-T1
Valid prediction for snap_scaffold_8-snap.2545-T1
Valid prediction for snap_scaffold_8-snap.2552-T1
Valid prediction for snap_scaffold_8-snap.2540-T1
Valid prediction for snap_scaffold_8-snap.2546-T1
Valid prediction for GlimmerHMM_glimmerT_20785-T1
Valid prediction for GlimmerHMM_glimmerT_20773-T1
Valid prediction for snap_scaffold_8-snap.2521-T1
Valid prediction for Augustus_model.g13858.t1
Valid prediction for snap_scaffold_8-snap.2524-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2535-T1
Valid prediction for GlimmerHMM_glimmerT_20778-T1
Valid prediction for snap_scaffold_8-snap.2537-T1
Valid prediction for snap_scaffold_8-snap.2553-T1
Valid prediction for GlimmerHMM_glimmerT_20774-T1
Valid prediction for GlimmerHMM_glimmerT_20787-T1
Valid prediction for GlimmerHMM_glimmerT_20769-T1
Valid prediction for GlimmerHMM_glimmerT_20791-T1
Valid prediction for snap_scaffold_8-snap.2529-T1
Valid prediction for Augustus_model.g13854.t1
Valid prediction for snap_scaffold_8-snap.2551-T1
Valid prediction for snap_scaffold_8-snap.2523-T1
Valid prediction for Augustus_model.g13860.t1
Valid prediction for snap_scaffold_8-snap.2522-T1
Valid prediction for snap_scaffold_8-snap.2548-T1
Valid prediction for snap_scaffold_8-snap.2543-T1
Valid prediction for snap_scaffold_8-snap.2539-T1
Valid prediction for GlimmerHMM_glimmerT_20771-T1
Valid prediction for snap_scaffold_8-snap.2517-T1
Valid prediction for Augustus_model.g13857.t1
Valid prediction for snap_scaffold_8-snap.2533-T1
Valid prediction for Augustus_model.g13852.t1
Valid prediction for snap_scaffold_8-snap.2527-T1
Valid prediction for snap_scaffold_8-snap.2511-T1
Valid prediction for snap_scaffold_8-snap.2556-T1
Valid prediction for snap_scaffold_8-snap.2542-T1
Valid prediction for Augustus_model.g13856.t1
Valid prediction for Augustus_model.g13853.t1
Valid prediction for GlimmerHMM_glimmerT_20772-T1
Valid prediction for snap_scaffold_8-snap.2514-T1
Valid prediction for snap_scaffold_8-snap.2512-T1
Valid prediction for snap_scaffold_8-snap.2534-T1
Valid prediction for GlimmerHMM_glimmerT_20775-T1
Valid prediction for Augustus_model.g13851.t1
Valid prediction for GlimmerHMM_glimmerT_20782-T1
Valid prediction for snap_scaffold_8-snap.2509-T1
Valid prediction for snap_scaffold_8-snap.2520-T1
Valid prediction for GlimmerHMM_glimmerT_20768-T1
Valid prediction for Augustus_model.g13859.t1
Valid prediction for snap_scaffold_8-snap.2549-T1
Valid prediction for snap_scaffold_8-snap.2532-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11309, rend_intergenic: 4703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27030, rend_intergenic: 24078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34385, rend_intergenic: 27282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41210, rend_intergenic: 35029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51864, rend_intergenic: 46747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56682, rend_intergenic: 52232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67976, rend_intergenic: 65366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89989, rend_intergenic: 71679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103267, rend_intergenic: 102053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120347, rend_intergenic: 109602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129155, rend_intergenic: 121598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147790, rend_intergenic: 142848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157249, rend_intergenic: 150441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162923, rend_intergenic: 158226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177867, rend_intergenic: 164591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186008, rend_intergenic: 178669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204245, rend_intergenic: 192795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208054, rend_intergenic: 205360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242499, rend_intergenic: 238910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256243, rend_intergenic: 251771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256836, rend_intergenic: 256343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 268729
-exon list size: 328


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
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3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.7    
13.0    
13.3    
13.6    
13.9    
14.2    
14.5    
14.8    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.1    
26.4    
26.7    
27.0    
27.3    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.2    
35.5    
35.8    
36.1    
36.4    
36.7    
37.0    
37.3    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.7    
63.0    
63.3    
63.6    
63.9    
64.2    
64.5    
64.8    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.7    
73.0    
73.3    
73.6    
73.9    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.2    
85.5    
85.8    
86.1    
86.4    
86.7    
87.0    
87.3    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 11309, rend_intergenic: 4703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27030, rend_intergenic: 24078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34385, rend_intergenic: 27282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41210, rend_intergenic: 35029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51864, rend_intergenic: 46747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56682, rend_intergenic: 52232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67976, rend_intergenic: 65366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89989, rend_intergenic: 71679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103267, rend_intergenic: 102053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120347, rend_intergenic: 109602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129155, rend_intergenic: 121598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147790, rend_intergenic: 142848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157249, rend_intergenic: 150441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162923, rend_intergenic: 158226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177867, rend_intergenic: 164591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186008, rend_intergenic: 178669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204245, rend_intergenic: 192795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208054, rend_intergenic: 205360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 242499, rend_intergenic: 238910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256243, rend_intergenic: 251771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256836, rend_intergenic: 256343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 256685 - 268729
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support