-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_13389020-13557142

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2431-T1
Valid prediction for Augustus_model.g13836.t1
Valid prediction for snap_scaffold_8-snap.2448-T1
Valid prediction for Augustus_model.g13829.t1
Valid prediction for Augustus_model.g13827.t1
Valid prediction for snap_scaffold_8-snap.2419-T1
Valid prediction for GlimmerHMM_glimmerT_20734-T1
Valid prediction for snap_scaffold_8-snap.2449-T1
Valid prediction for Augustus_model.g13834.t1
Valid prediction for snap_scaffold_8-snap.2439-T1
Valid prediction for Augustus_model.g13833.t1
Valid prediction for Augustus_model.g13831.t1
Valid prediction for GlimmerHMM_glimmerT_20731-T1
Valid prediction for GlimmerHMM_glimmerT_20730-T1
Valid prediction for snap_scaffold_8-snap.2442-T1
Valid prediction for snap_scaffold_8-snap.2426-T1
Valid prediction for Augustus_model.g13828.t1
Valid prediction for Augustus_model.g13824.t1
Valid prediction for snap_scaffold_8-snap.2444-T1
Valid prediction for GlimmerHMM_glimmerT_20720-T1
Valid prediction for GlimmerHMM_glimmerT_20726-T1
Valid prediction for snap_scaffold_8-snap.2445-T1
Valid prediction for GlimmerHMM_glimmerT_20725-T1
Valid prediction for Augustus_model.g13835.t1
Valid prediction for snap_scaffold_8-snap.2453-T1
Valid prediction for snap_scaffold_8-snap.2451-T1
Valid prediction for GlimmerHMM_glimmerT_20727-T1
Valid prediction for GlimmerHMM_glimmerT_20724-T1
Valid prediction for snap_scaffold_8-snap.2455-T1
Valid prediction for GlimmerHMM_glimmerT_20732-T1
Valid prediction for Augustus_model.g13832.t1
Valid prediction for snap_scaffold_8-snap.2436-T1
Valid prediction for GlimmerHMM_glimmerT_20728-T1
Valid prediction for Augustus_model.g13826.t1
Valid prediction for snap_scaffold_8-snap.2428-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2440-T1
Valid prediction for snap_scaffold_8-snap.2423-T1
Valid prediction for snap_scaffold_8-snap.2441-T1
Valid prediction for snap_scaffold_8-snap.2435-T1
Valid prediction for snap_scaffold_8-snap.2447-T1
Valid prediction for snap_scaffold_8-snap.2420-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_20735-T1
Couldn't classify 2410, 2525
Sorry, prediction pasa_asmbl_52287.p1 fails validation.
(ATG)	 TC	527-625	GT	CGG
(GAA)	 AG	1265-1355	GT	AGG
(GTG)	 AG	2410-2525	AT	CCA
-recovered pasa_asmbl_52287.p1, initial, 527, 625
-recovered pasa_asmbl_52287.p1, internal, 1265, 1355
Valid prediction for snap_scaffold_8-snap.2446-T1
Valid prediction for snap_scaffold_8-snap.2454-T1
Valid prediction for snap_scaffold_8-snap.2443-T1
Valid prediction for snap_scaffold_8-snap.2425-T1
Valid prediction for Augustus_model.g13838.t1
Valid prediction for snap_scaffold_8-snap.2422-T1
Valid prediction for GlimmerHMM_glimmerT_20729-T1
Valid prediction for Augustus_model.g13830.t1
Valid prediction for snap_scaffold_8-snap.2452-T1
Valid prediction for GlimmerHMM_glimmerT_20733-T1
Valid prediction for GlimmerHMM_glimmerT_20721-T1
Valid prediction for snap_scaffold_8-snap.2432-T1
Valid prediction for snap_scaffold_8-snap.2438-T1
Valid prediction for snap_scaffold_8-snap.2424-T1
Valid prediction for snap_scaffold_8-snap.2427-T1
Valid prediction for GlimmerHMM_glimmerT_20723-T1
Valid prediction for snap_scaffold_8-snap.2450-T1
Valid prediction for snap_scaffold_8-snap.2429-T1
Valid prediction for snap_scaffold_8-snap.2434-T1
Valid prediction for snap_scaffold_8-snap.2433-T1
Valid prediction for Augustus_model.g13837.t1
Valid prediction for snap_scaffold_8-snap.2421-T1
Valid prediction for snap_scaffold_8-snap.2437-T1
Valid prediction for snap_scaffold_8-snap.2430-T1
Valid prediction for GlimmerHMM_glimmerT_20722-T1
Valid prediction for Augustus_model.g13825.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6864, rend_intergenic: 5034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25092, rend_intergenic: 22408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29112, rend_intergenic: 25124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50120, rend_intergenic: 34682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54107, rend_intergenic: 53555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82457, rend_intergenic: 57083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83121, rend_intergenic: 82930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87589, rend_intergenic: 83946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92365, rend_intergenic: 90468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101407, rend_intergenic: 93913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113913, rend_intergenic: 102852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115826, rend_intergenic: 114933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125346, rend_intergenic: 116903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131688, rend_intergenic: 127292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141011, rend_intergenic: 131691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142118, rend_intergenic: 141914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144296, rend_intergenic: 142834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146699, rend_intergenic: 146258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157499, rend_intergenic: 153183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167807, rend_intergenic: 161692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 168123
-exon list size: 263


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.6    
3.0    
3.4    
3.8    
4.2    
4.5    
4.9    
5.3    
5.7    
6.0    
6.4    
6.8    
7.2    
7.5    
7.9    
8.3    
8.7    
9.1    
9.4    
9.8    
10.2    
10.6    
10.9    
11.3    
11.7    
12.1    
12.5    
12.8    
13.2    
13.6    
14.0    
14.3    
14.7    
15.1    
15.5    
15.8    
16.2    
16.6    
17.0    
17.4    
17.7    
18.1    
18.5    
18.9    
19.2    
19.6    
20.0    
20.4    
20.8    
21.1    
21.5    
21.9    
22.3    
22.6    
23.0    
23.4    
23.8    
24.2    
24.5    
24.9    
25.3    
25.7    
26.0    
26.4    
26.8    
27.2    
27.5    
27.9    
28.3    
28.7    
29.1    
29.4    
29.8    
30.2    
30.6    
30.9    
31.3    
31.7    
32.1    
32.5    
32.8    
33.2    
33.6    
34.0    
34.3    
34.7    
35.1    
35.5    
35.8    
36.2    
36.6    
37.0    
37.4    
37.7    
38.1    
38.5    
38.9    
39.2    
39.6    
40.0    
40.4    
40.8    
41.1    
41.5    
41.9    
42.3    
42.6    
43.0    
43.4    
43.8    
44.2    
44.5    
44.9    
45.3    
45.7    
46.0    
46.4    
46.8    
47.2    
47.5    
47.9    
48.3    
48.7    
49.1    
49.4    
49.8    
50.2    
50.6    
50.9    
51.3    
51.7    
52.1    
52.5    
52.8    
53.2    
53.6    
54.0    
54.3    
54.7    
55.1    
55.5    
55.8    
56.2    
56.6    
57.0    
57.4    
57.7    
58.1    
58.5    
58.9    
59.2    
59.6    
60.0    
60.4    
60.8    
61.1    
61.5    
61.9    
62.3    
62.6    
63.0    
63.4    
63.8    
64.2    
64.5    
64.9    
65.3    
65.7    
66.0    
66.4    
66.8    
67.2    
67.5    
67.9    
68.3    
68.7    
69.1    
69.4    
69.8    
70.2    
70.6    
70.9    
71.3    
71.7    
72.1    
72.5    
72.8    
73.2    
73.6    
74.0    
74.3    
74.7    
75.1    
75.5    
75.8    
76.2    
76.6    
77.0    
77.4    
77.7    
78.1    
78.5    
78.9    
79.2    
79.6    
80.0    
80.4    
80.8    
81.1    
81.5    
81.9    
82.3    
82.6    
83.0    
83.4    
83.8    
84.2    
84.5    
84.9    
85.3    
85.7    
86.0    
86.4    
86.8    
87.2    
87.5    
87.9    
88.3    
88.7    
89.1    
89.4    
89.8    
90.2    
90.6    
90.9    
91.3    
91.7    
92.1    
92.5    
92.8    
93.2    
93.6    
94.0    
94.3    
94.7    
95.1    
95.5    
95.8    
96.2    
96.6    
97.0    
97.4    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 6864, rend_intergenic: 5034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25092, rend_intergenic: 22408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29112, rend_intergenic: 25124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50120, rend_intergenic: 34682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54107, rend_intergenic: 53555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82457, rend_intergenic: 57083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83121, rend_intergenic: 82930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87589, rend_intergenic: 83946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92365, rend_intergenic: 90468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101407, rend_intergenic: 93913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113913, rend_intergenic: 102852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115826, rend_intergenic: 114933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125346, rend_intergenic: 116903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131688, rend_intergenic: 127292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141011, rend_intergenic: 131691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142118, rend_intergenic: 141914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144296, rend_intergenic: 142834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146699, rend_intergenic: 146258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157499, rend_intergenic: 153183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167807, rend_intergenic: 161692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support