-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_12759095-13029039

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20643-T1
Valid prediction for snap_scaffold_8-snap.2351-T1
Valid prediction for GlimmerHMM_glimmerT_20647-T1
Valid prediction for snap_scaffold_8-snap.2331-T1
Valid prediction for Augustus_model.g13788.t1
Valid prediction for GlimmerHMM_glimmerT_20640-T1
Valid prediction for Augustus_model.g13785.t1
Valid prediction for GlimmerHMM_glimmerT_20654-T1
Couldn't classify 205365, 205521
Sorry, prediction pasa_asmbl_53346.p1 fails validation.
(TGG)	 TG	205365-205521	GT	AGG
(ACG)	 AG	206245-206412	GT	CGG
(GGT)	 AG	206500-206683	GT	AGG
(GGC)	 AG	207536-207628	GT	AGG
(GGG)	 AG	207921-208019	GT	AGG
(GAA)	 AG	208260-208329	GT	ATG
(GTA)	 AG	208445-208529	GT	AGG
(AGA)	 AG	210279-210487	CT	AAC
-recovered pasa_asmbl_53346.p1, terminal, 210279, 210487
-recovered pasa_asmbl_53346.p1, internal, 206245, 206412
-recovered pasa_asmbl_53346.p1, internal, 206500, 206683
-recovered pasa_asmbl_53346.p1, internal, 207536, 207628
-recovered pasa_asmbl_53346.p1, internal, 207921, 208019
-recovered pasa_asmbl_53346.p1, internal, 208260, 208329
-recovered pasa_asmbl_53346.p1, internal, 208445, 208529
Valid prediction for GlimmerHMM_glimmerT_20657-T1
Valid prediction for Augustus_model.g13776.t1
Valid prediction for snap_scaffold_8-snap.2332-T1
Valid prediction for snap_scaffold_8-snap.2317-T1
Valid prediction for snap_scaffold_8-snap.2335-T1
Valid prediction for GlimmerHMM_glimmerT_20644-T1
Couldn't classify 94238, 94267
Couldn't classify 94807, 94934
Sorry, prediction pasa_asmbl_53343.p1 fails validation.
(GAG)	 TG	94238-94267	GT	AGG
(ATC)	 AG	94361-94466	GT	TGG
(ATG)	 AG	94574-94678	GT	AGG
(AGA)	 AG	94807-94934	CC	CGC
add_exon() Sorry, pasa_asmbl_53343.p1 94574-94678-initial-1 is invalid.
-recovered pasa_asmbl_53343.p1, initial, 94574, 94678
-recovered pasa_asmbl_53343.p1, internal, 94361, 94466
-recovered pasa_asmbl_53343.p1, internal, 94574, 94678
Valid prediction for snap_scaffold_8-snap.2322-T1
Valid prediction for snap_scaffold_8-snap.2324-T1
Valid prediction for snap_scaffold_8-snap.2327-T1
Valid prediction for snap_scaffold_8-snap.2337-T1
Valid prediction for GlimmerHMM_glimmerT_20638-T1
Valid prediction for snap_scaffold_8-snap.2336-T1
Valid prediction for snap_scaffold_8-snap.2319-T1
Valid prediction for snap_scaffold_8-snap.2334-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_20649-T1
Couldn't classify 95061, 95237
Sorry, prediction pasa_asmbl_53344.p1 fails validation.
(TAT)	 GG	95061-95237	GT	AGG
(GTG)	 AG	95337-95471	GT	CGG
(GTT)	 AG	95565-95681	GT	AGG
(GGC)	 AG	95781-95920	GT	AGG
(TTT)	 AG	96302-96314	GA	AGG
-recovered pasa_asmbl_53344.p1, terminal, 96302, 96314
-recovered pasa_asmbl_53344.p1, internal, 95337, 95471
-recovered pasa_asmbl_53344.p1, internal, 95565, 95681
-recovered pasa_asmbl_53344.p1, internal, 95781, 95920
Couldn't classify 92623, 92736
Couldn't classify 93980, 94002
Sorry, prediction pasa_asmbl_53342.p1 fails validation.
(TCC)	 AC	92623-92736	GT	AGG
(TTT)	 AG	92830-92883	GT	AGG
(TTT)	 AG	92974-93030	GT	AGG
(ATC)	 AG	93134-93213	GT	AAG
(GAT)	 AG	93332-93533	GT	TGG
(AGG)	 AG	93702-93867	GT	GCG
(GCT)	 AG	93980-94002	GA	AGG
-recovered pasa_asmbl_53342.p1, internal, 92830, 92883
-recovered pasa_asmbl_53342.p1, internal, 92974, 93030
-recovered pasa_asmbl_53342.p1, internal, 93134, 93213
-recovered pasa_asmbl_53342.p1, internal, 93332, 93533
-recovered pasa_asmbl_53342.p1, internal, 93702, 93867
Valid prediction for Augustus_model.g13790.t1
Valid prediction for GlimmerHMM_glimmerT_20658-T1
Couldn't classify 36937, 37362
Sorry, prediction pasa_asmbl_52231.p1 fails validation.
(ACA)	 AC	36937-37362	TG	TGT
Valid prediction for Augustus_model.g13782.t1
Valid prediction for snap_scaffold_8-snap.2350-T1
Valid prediction for snap_scaffold_8-snap.2318-T1
Valid prediction for Augustus_model.g13777.t1
Valid prediction for HiQ_model.g13779.t1
Valid prediction for Augustus_model.g13771.t1
Valid prediction for GlimmerHMM_glimmerT_20660-T1
Valid prediction for Augustus_model.g13781.t1
Valid prediction for GlimmerHMM_glimmerT_20663-T1
Valid prediction for snap_scaffold_8-snap.2341-T1
Valid prediction for GlimmerHMM_glimmerT_20632-T1
Valid prediction for GlimmerHMM_glimmerT_20651-T1
Valid prediction for GlimmerHMM_glimmerT_20637-T1
Valid prediction for snap_scaffold_8-snap.2329-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2320-T1
Valid prediction for snap_scaffold_8-snap.2347-T1
Valid prediction for CodingQuarry_transcript_59874-T1
Valid prediction for Augustus_model.g13794.t1
Valid prediction for CodingQuarry_transcript_59870-T1
Couldn't classify 205864, 206019
Couldn't classify 208236, 208258
Sorry, prediction pasa_asmbl_52237.p1 fails validation.
(TGG)	 GG	205864-206019	GT	AGG
(GCC)	 AG	206380-206457	GT	AGG
(ATC)	 AG	206668-206744	GT	AGG
(CCT)	 AG	207720-207787	GT	TGG
(AGG)	 AG	208236-208258	AG	AGA
-recovered pasa_asmbl_52237.p1, internal, 206380, 206457
-recovered pasa_asmbl_52237.p1, internal, 206668, 206744
-recovered pasa_asmbl_52237.p1, internal, 207720, 207787
Couldn't classify 248580, 248954
Sorry, prediction pasa_asmbl_52229.p3 fails validation.
(TCC)	 CC	248580-248954	CA	AGC
Valid prediction for CodingQuarry_transcript_59866-T1
Valid prediction for GlimmerHMM_glimmerT_20639-T1
Valid prediction for pasa_asmbl_52239.p1
Valid prediction for GlimmerHMM_glimmerT_20664-T1
Valid prediction for GlimmerHMM_glimmerT_20662-T1
Couldn't classify 239723, 239804
Sorry, prediction pasa_asmbl_52230.p1 fails validation.
(CAC)	 TG	239723-239804	GT	CGG
(CCA)	 AG	242059-242097	GT	TGG
(TGT)	 AG	242235-242320	GT	AGG
(GTG)	 AG	242649-242698	GT	AAG
(TAT)	 AG	243571-243791	GT	GGG
(GGC)	 AG	245865-246130	GT	AGG
(GGT)	 AG	246389-246613	GT	CTG
(CAC)	 AG	247064-247147	GT	AGG
(CTG)	 AG	247399-247597	GT	AGG
(ACG)	 AG	247741-247943	AA	GAA
-recovered pasa_asmbl_52230.p1, terminal, 247741, 247943
-recovered pasa_asmbl_52230.p1, internal, 242059, 242097
-recovered pasa_asmbl_52230.p1, internal, 242235, 242320
-recovered pasa_asmbl_52230.p1, internal, 242649, 242698
-recovered pasa_asmbl_52230.p1, internal, 243571, 243791
-recovered pasa_asmbl_52230.p1, internal, 245865, 246130
-recovered pasa_asmbl_52230.p1, internal, 246389, 246613
-recovered pasa_asmbl_52230.p1, internal, 247064, 247147
-recovered pasa_asmbl_52230.p1, internal, 247399, 247597
Valid prediction for Augustus_model.g13795.t1
Valid prediction for snap_scaffold_8-snap.2338-T1
Valid prediction for snap_scaffold_8-snap.2328-T1
Valid prediction for snap_scaffold_8-snap.2321-T1
Couldn't classify 165355, 165418
Couldn't classify 168221, 168332
Sorry, prediction pasa_asmbl_52241.p2 fails validation.
(AAG)	 AC	165355-165418	GT	AGG
(ATA)	 AG	165526-165621	GT	TGG
(AAA)	 AG	166096-166293	GT	AAG
(AAC)	 AG	166513-166579	GT	AGG
(TCC)	 AG	167316-167396	GT	AGG
(AGG)	 AG	168221-168332	AC	CCA
-recovered pasa_asmbl_52241.p2, internal, 165526, 165621
-recovered pasa_asmbl_52241.p2, internal, 166096, 166293
-recovered pasa_asmbl_52241.p2, internal, 166513, 166579
-recovered pasa_asmbl_52241.p2, internal, 167316, 167396
Valid prediction for GlimmerHMM_glimmerT_20648-T1
Valid prediction for GlimmerHMM_glimmerT_20641-T1
Valid prediction for GlimmerHMM_glimmerT_20633-T1
Valid prediction for pasa_asmbl_52260.p1
Valid prediction for Augustus_model.g13783.t1
Valid prediction for GlimmerHMM_glimmerT_20631-T1
Valid prediction for GlimmerHMM_glimmerT_20656-T1
Valid prediction for snap_scaffold_8-snap.2326-T1
Valid prediction for GlimmerHMM_glimmerT_20635-T1
Valid prediction for Augustus_model.g13786.t1
Valid prediction for GlimmerHMM_glimmerT_20634-T1
Valid prediction for GlimmerHMM_glimmerT_20653-T1
Valid prediction for GlimmerHMM_glimmerT_20665-T1
Valid prediction for HiQ_model.g13784.t1
Valid prediction for HiQ_model.g13791.t1
Valid prediction for pasa_asmbl_52261.p1
Valid prediction for Augustus_model.g13780.t1
Valid prediction for GlimmerHMM_glimmerT_20652-T1
Couldn't classify 46522, 46586
Sorry, prediction pasa_asmbl_52263.p1 fails validation.
(CTT)	 AC	46522-46586	GT	AAG
(GAT)	 AG	47224-47347	GT	AGG
(GTC)	 AG	47728-47776	GT	AGG
(GCT)	 AG	47943-48041	GT	AGG
(TTG)	 AG	48241-48317	AC	AAA
-recovered pasa_asmbl_52263.p1, terminal, 48241, 48317
-recovered pasa_asmbl_52263.p1, internal, 47224, 47347
-recovered pasa_asmbl_52263.p1, internal, 47728, 47776
-recovered pasa_asmbl_52263.p1, internal, 47943, 48041
Valid prediction for GlimmerHMM_glimmerT_20655-T1
Valid prediction for HiQ_model.g13792.t1
Couldn't classify 170192, 170471
Sorry, prediction pasa_asmbl_52240.p1 fails validation.
(ACT)	 AC	170192-170471	GT	AGG
(GTC)	 AG	170580-170771	GT	GGG
(ACA)	 AG	171014-171205	GT	GGG
(GCC)	 AG	171806-171988	GT	GGG
(AAT)	 AG	172222-172316	GT	AGG
(TGC)	 AG	172434-172630	GT	TGG
(GCA)	 AG	172779-172915	GT	AGG
(ACA)	 AG	173100-173290	TC	AAT
-recovered pasa_asmbl_52240.p1, terminal, 173100, 173290
-recovered pasa_asmbl_52240.p1, internal, 170580, 170771
-recovered pasa_asmbl_52240.p1, internal, 171014, 171205
-recovered pasa_asmbl_52240.p1, internal, 171806, 171988
-recovered pasa_asmbl_52240.p1, internal, 172222, 172316
-recovered pasa_asmbl_52240.p1, internal, 172434, 172630
-recovered pasa_asmbl_52240.p1, internal, 172779, 172915
Valid prediction for GlimmerHMM_glimmerT_20630-T1
Valid prediction for CodingQuarry_transcript_59872-T1
Valid prediction for GlimmerHMM_glimmerT_20650-T1
Valid prediction for CodingQuarry_transcript_59873-T1
Valid prediction for snap_scaffold_8-snap.2323-T1
Valid prediction for CodingQuarry_transcript_59871-T1
Valid prediction for Augustus_model.g13775.t1
Valid prediction for GlimmerHMM_glimmerT_20661-T1
Valid prediction for snap_scaffold_8-snap.2316-T1
Valid prediction for HiQ_model.g13773.t1
Couldn't classify 208772, 208870
Couldn't classify 210751, 210914
Sorry, prediction pasa_asmbl_52236.p1 fails validation.
(AAC)	 CC	208772-208870	GT	GGG
(CTG)	 AG	208999-209086	GT	CTG
(TGT)	 AG	209203-209366	GT	AGG
(ACC)	 AG	209474-209558	GT	AAG
(TGT)	 AG	209673-209836	GT	AGG
(GGA)	 AG	210021-210181	GT	AGG
(GTA)	 AG	210403-210527	GT	ACG
(GTA)	 AG	210751-210914	GT	ATG
-recovered pasa_asmbl_52236.p1, internal, 208999, 209086
-recovered pasa_asmbl_52236.p1, internal, 209203, 209366
-recovered pasa_asmbl_52236.p1, internal, 209474, 209558
-recovered pasa_asmbl_52236.p1, internal, 209673, 209836
-recovered pasa_asmbl_52236.p1, internal, 210021, 210181
-recovered pasa_asmbl_52236.p1, internal, 210403, 210527
-recovered pasa_asmbl_52236.p1, internal, 210751, 210914
Valid prediction for snap_scaffold_8-snap.2330-T1
Valid prediction for snap_scaffold_8-snap.2344-T1
Valid prediction for GlimmerHMM_glimmerT_20636-T1
Valid prediction for snap_scaffold_8-snap.2339-T1
Valid prediction for Augustus_model.g13772.t1
Valid prediction for snap_scaffold_8-snap.2340-T1
Valid prediction for snap_scaffold_8-snap.2325-T1
Valid prediction for snap_scaffold_8-snap.2349-T1
Valid prediction for pasa_asmbl_52233.p1
Valid prediction for HiQ_model.g13793.t1
Valid prediction for pasa_asmbl_52244.p1
Valid prediction for snap_scaffold_8-snap.2345-T1
Valid prediction for HiQ_model.g13778.t1
Valid prediction for GlimmerHMM_glimmerT_20645-T1
Valid prediction for snap_scaffold_8-snap.2346-T1
Valid prediction for snap_scaffold_8-snap.2342-T1
Valid prediction for snap_scaffold_8-snap.2315-T1
Valid prediction for GlimmerHMM_glimmerT_20646-T1
Couldn't classify 109695, 109696
Sorry, prediction CodingQuarry_transcript_59868-T1 fails validation.
(ATG)	 AG	109695-109696	GT	ATG
(GTA)	 AG	110318-110403	GT	CGG
(ACA)	 AG	110568-110693	GT	AGG
(GAG)	 AG	110994-111115	GT	AGG
(GGT)	 AG	111260-111472	GT	ACG
(CTG)	 AG	111829-111970	GT	AGG
(ATC)	 AG	112241-112464	GT	AGG
(GAG)	 AG	112759-112886	GT	CTG
(GTA)	 AG	113089-113203	GT	ACG
(GAA)	 AG	113334-113441	GT	AGG
(GAC)	 AG	113613-113729	GT	AGG
(AAC)	 AG	113826-113966	GT	AGG
(GTC)	 AG	114354-114447	GT	AGG
(GCT)	 AG	115178-115303	GT	CGG
(AGT)	 AG	117231-117379	TT	GAT
add_exon() Sorry, CodingQuarry_transcript_59868-T1 114354-114447-terminal-3 is invalid.
-recovered CodingQuarry_transcript_59868-T1, terminal, 114354, 114447
-recovered CodingQuarry_transcript_59868-T1, terminal, 117231, 117379
-recovered CodingQuarry_transcript_59868-T1, internal, 109695, 109696
-recovered CodingQuarry_transcript_59868-T1, internal, 110318, 110403
-recovered CodingQuarry_transcript_59868-T1, internal, 110568, 110693
-recovered CodingQuarry_transcript_59868-T1, internal, 110994, 111115
-recovered CodingQuarry_transcript_59868-T1, internal, 111260, 111472
-recovered CodingQuarry_transcript_59868-T1, internal, 111829, 111970
-recovered CodingQuarry_transcript_59868-T1, internal, 112241, 112464
-recovered CodingQuarry_transcript_59868-T1, internal, 112759, 112886
-recovered CodingQuarry_transcript_59868-T1, internal, 113089, 113203
-recovered CodingQuarry_transcript_59868-T1, internal, 113334, 113441
-recovered CodingQuarry_transcript_59868-T1, internal, 113613, 113729
-recovered CodingQuarry_transcript_59868-T1, internal, 113826, 113966
-recovered CodingQuarry_transcript_59868-T1, internal, 114354, 114447
-recovered CodingQuarry_transcript_59868-T1, internal, 115178, 115303
Valid prediction for HiQ_model.g13787.t1
Valid prediction for snap_scaffold_8-snap.2343-T1
Couldn't classify 228207, 228335
Sorry, prediction pasa_asmbl_52232.p1 fails validation.
(ATG)	 CC	224434-224565	GT	GGG
(GTG)	 AG	226500-226610	GT	AGG
(GGG)	 AG	228207-228335	AT	AGA
-recovered pasa_asmbl_52232.p1, initial, 224434, 224565
-recovered pasa_asmbl_52232.p1, internal, 226500, 226610
Valid prediction for GlimmerHMM_glimmerT_20642-T1
Valid prediction for GlimmerHMM_glimmerT_20659-T1
Valid prediction for CodingQuarry_transcript_59867-T1
Couldn't classify 168593, 168661
Couldn't classify 169007, 169234
Sorry, prediction pasa_asmbl_52575.p1 fails validation.
(TCA)	 AG	168593-168661	GT	GGG
(GGC)	 AG	168768-168920	GT	AGG
(GAG)	 AG	169007-169234	AG	CCA
-recovered pasa_asmbl_52575.p1, internal, 168593, 168661
-recovered pasa_asmbl_52575.p1, internal, 168768, 168920
Valid prediction for pasa_asmbl_52246.p1
Valid prediction for HiQ_model.g13774.t1
Valid prediction for HiQ_model.g13789.t1
Valid prediction for pasa_asmbl_52258.p1
Valid prediction for snap_scaffold_8-snap.2348-T1
Valid prediction for snap_scaffold_8-snap.2333-T1
Valid prediction for CodingQuarry_transcript_59869-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 35628, rend_intergenic: 20486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42616, rend_intergenic: 35863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68069, rend_intergenic: 66281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97693, rend_intergenic: 96656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123181, rend_intergenic: 116834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164246, rend_intergenic: 145044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210960, rend_intergenic: 204060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 268337, rend_intergenic: 258382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 269945
-exon list size: 530


building trellis

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35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
36.8    
37.0    
37.2    
37.4    
37.6    
37.8    
38.0    
38.2    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.8    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.5    
41.7    
41.9    
42.1    
42.3    
42.5    
42.7    
42.9    
43.0    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.5    
44.7    
44.9    
45.1    
45.3    
45.5    
45.7    
45.9    
46.1    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.6    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.4    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
53.9    
54.1    
54.3    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
57.0    
57.1    
57.3    
57.5    
57.7    
57.9    
58.1    
58.3    
58.5    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.2    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
63.0    
63.2    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.8    
65.0    
65.2    
65.4    
65.6    
65.8    
66.0    
66.2    
66.4    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
67.9    
68.0    
68.2    
68.4    
68.6    
68.8    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.4    
72.6    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
75.9    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.6    
80.8    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.6    
83.8    
84.0    
84.2    
84.4    
84.6    
84.8    
85.0    
85.2    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.3    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.5    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.2    
99.4    
99.6    
99.8    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 35628, rend_intergenic: 20486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42616, rend_intergenic: 35863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68069, rend_intergenic: 66281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97693, rend_intergenic: 96656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123181, rend_intergenic: 116834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164246, rend_intergenic: 145044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210960, rend_intergenic: 204060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 268337, rend_intergenic: 258382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13227
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12033
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 1 - 11175