-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_12268350-12546530

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2246-T1
Valid prediction for snap_scaffold_8-snap.2259-T1
Valid prediction for snap_scaffold_8-snap.2233-T1
Valid prediction for pasa_asmbl_53308.p1
Valid prediction for GlimmerHMM_glimmerT_20577-T1
Valid prediction for GlimmerHMM_glimmerT_20578-T1
Valid prediction for GlimmerHMM_glimmerT_20595-T1
Valid prediction for GlimmerHMM_glimmerT_20576-T1
Valid prediction for snap_scaffold_8-snap.2273-T1
Valid prediction for Augustus_model.g13732.t1
Valid prediction for Augustus_model.g13726.t1
Valid prediction for pasa_asmbl_53307.p1
Couldn't classify 252541, 252799
Sorry, prediction pasa_asmbl_53314.p1 fails validation.
(GCT)	 AC	252541-252799	GT	CAG
(AGC)	 AG	254082-254221	TG	GAT
-recovered pasa_asmbl_53314.p1, terminal, 254082, 254221
Valid prediction for Augustus_model.g13740.t1
Valid prediction for snap_scaffold_8-snap.2266-T1
Valid prediction for snap_scaffold_8-snap.2271-T1
Valid prediction for snap_scaffold_8-snap.2249-T1
Valid prediction for GlimmerHMM_glimmerT_20579-T1
Valid prediction for CodingQuarry_transcript_59847-T1
Valid prediction for snap_scaffold_8-snap.2257-T1
Valid prediction for Augustus_model.g13719.t1
Valid prediction for GlimmerHMM_glimmerT_20587-T1
Valid prediction for snap_scaffold_8-snap.2247-T1
Valid prediction for snap_scaffold_8-snap.2262-T1
Valid prediction for snap_scaffold_8-snap.2242-T1
Valid prediction for snap_scaffold_8-snap.2243-T1
Valid prediction for snap_scaffold_8-snap.2241-T1
Valid prediction for HiQ_model.g13739.t1
Valid prediction for GlimmerHMM_glimmerT_20593-T1
Couldn't classify 266931, 266942
Couldn't classify 269206, 269301
Sorry, prediction pasa_asmbl_53317.p1 fails validation.
(AGA)	 TC	266931-266942	GT	AGG
(ATT)	 AG	267247-267351	GT	AAG
(GCA)	 AG	267597-267737	GT	CAG
(ACT)	 AG	269206-269301	GC	GGG
-recovered pasa_asmbl_53317.p1, internal, 267247, 267351
-recovered pasa_asmbl_53317.p1, internal, 267597, 267737
-recovered pasa_asmbl_53317.p1, internal, 269206, 269301
Valid prediction for snap_scaffold_8-snap.2274-T1
Valid prediction for Augustus_model.g13725.t1
Couldn't classify 252194, 252315
Sorry, prediction pasa_asmbl_53313.p1 fails validation.
(ATG)	 GG	251702-251942	GT	TGG
(CCG)	 AG	252194-252315	GC	ATG
-recovered pasa_asmbl_53313.p1, initial, 251702, 251942
-recovered pasa_asmbl_53313.p1, internal, 252194, 252315
Valid prediction for snap_scaffold_8-snap.2252-T1
Valid prediction for snap_scaffold_8-snap.2265-T1
Valid prediction for GlimmerHMM_glimmerT_20583-T1
Valid prediction for snap_scaffold_8-snap.2263-T1
Valid prediction for snap_scaffold_8-snap.2272-T1
Valid prediction for snap_scaffold_8-snap.2258-T1
Valid prediction for snap_scaffold_8-snap.2229-T1
Valid prediction for GlimmerHMM_glimmerT_20596-T1
Valid prediction for GlimmerHMM_glimmerT_20590-T1
Valid prediction for HiQ_model.g13729.t1
Valid prediction for GlimmerHMM_glimmerT_20588-T1
Valid prediction for snap_scaffold_8-snap.2245-T1
Valid prediction for HiQ_model.g13728.t1
Valid prediction for GlimmerHMM_glimmerT_20597-T1
Valid prediction for snap_scaffold_8-snap.2270-T1
Valid prediction for snap_scaffold_8-snap.2264-T1
Valid prediction for GlimmerHMM_glimmerT_20569-T1
Valid prediction for snap_scaffold_8-snap.2231-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 54730, 54759
Couldn't classify 59806, 59848
Sorry, prediction pasa_asmbl_52565.p1 fails validation.
(CAG)	 CC	54730-54759	GT	TGG
(GTC)	 AG	56172-56255	GT	CTG
(GAG)	 AG	56903-57060	GT	AGG
(GAC)	 AG	59806-59848	GG	TGG
-recovered pasa_asmbl_52565.p1, internal, 56172, 56255
-recovered pasa_asmbl_52565.p1, internal, 56903, 57060
Valid prediction for GlimmerHMM_glimmerT_20594-T1
Valid prediction for snap_scaffold_8-snap.2255-T1
Valid prediction for snap_scaffold_8-snap.2236-T1
Valid prediction for GlimmerHMM_glimmerT_20585-T1
Couldn't classify 214638, 214901
Sorry, prediction pasa_asmbl_52188.p1 fails validation.
(CGC)	 TC	214638-214901	GT	AGG
(GTC)	 AG	215100-215204	GT	TGG
(GTT)	 AG	215376-215540	GT	AGG
(TGC)	 AG	215885-216010	GT	TTG
(TAT)	 AG	216344-216477	GT	AGG
(TGG)	 AG	216757-216883	GT	AGG
(GAC)	 AG	217225-217460	GT	AGG
(CTC)	 AG	217588-217732	GT	AGG
(GTG)	 AG	217846-217986	GT	AGG
(GTG)	 AG	218214-218295	GT	AGG
(AAC)	 AG	218400-218469	GT	AAG
(GTA)	 AG	218561-218672	GT	AGG
(ACC)	 AG	218987-219100	GC	AAG
(CTG)	 AG	219298-219431	GT	AAG
(GCT)	 AG	219545-219626	GT	AGG
(TTC)	 AG	219887-220000	GT	AGG
(GGA)	 AG	220141-220216	GT	TGG
(GTG)	 AG	220493-220656	GT	AGG
(GGA)	 AG	221342-221387	GT	AGG
(GAG)	 AG	221664-221787	GT	AGG
(GGT)	 AG	223703-223817	GT	AGG
(AGG)	 AG	225303-225394	GT	AGG
(GAG)	 AG	225526-225649	GT	AGG
(GAA)	 AG	225792-225875	GT	AGG
(AAA)	 AG	226200-226301	CA	GAC
-recovered pasa_asmbl_52188.p1, terminal, 226200, 226301
-recovered pasa_asmbl_52188.p1, internal, 215100, 215204
-recovered pasa_asmbl_52188.p1, internal, 215376, 215540
-recovered pasa_asmbl_52188.p1, internal, 215885, 216010
-recovered pasa_asmbl_52188.p1, internal, 216344, 216477
-recovered pasa_asmbl_52188.p1, internal, 216757, 216883
-recovered pasa_asmbl_52188.p1, internal, 217225, 217460
-recovered pasa_asmbl_52188.p1, internal, 217588, 217732
-recovered pasa_asmbl_52188.p1, internal, 217846, 217986
-recovered pasa_asmbl_52188.p1, internal, 218214, 218295
-recovered pasa_asmbl_52188.p1, internal, 218400, 218469
-recovered pasa_asmbl_52188.p1, internal, 218561, 218672
-recovered pasa_asmbl_52188.p1, internal, 218987, 219100
-recovered pasa_asmbl_52188.p1, internal, 219298, 219431
-recovered pasa_asmbl_52188.p1, internal, 219545, 219626
-recovered pasa_asmbl_52188.p1, internal, 219887, 220000
-recovered pasa_asmbl_52188.p1, internal, 220141, 220216
-recovered pasa_asmbl_52188.p1, internal, 220493, 220656
-recovered pasa_asmbl_52188.p1, internal, 221342, 221387
-recovered pasa_asmbl_52188.p1, internal, 221664, 221787
-recovered pasa_asmbl_52188.p1, internal, 223703, 223817
-recovered pasa_asmbl_52188.p1, internal, 225303, 225394
-recovered pasa_asmbl_52188.p1, internal, 225526, 225649
-recovered pasa_asmbl_52188.p1, internal, 225792, 225875
Valid prediction for Augustus_model.g13736.t1
Valid prediction for snap_scaffold_8-snap.2230-T1
Valid prediction for snap_scaffold_8-snap.2260-T1
Valid prediction for Augustus_model.g13724.t1
Couldn't classify 194549, 194606
Couldn't classify 195118, 195261
Sorry, prediction pasa_asmbl_52201.p1 fails validation.
(TTA)	 AC	194549-194606	GT	CAG
(GCA)	 AG	194827-194927	GT	AGG
(TAT)	 AG	195118-195261	TA	AGT
-recovered pasa_asmbl_52201.p1, internal, 194827, 194927
Valid prediction for snap_scaffold_8-snap.2244-T1
Valid prediction for pasa_asmbl_52199.p1
Couldn't classify 75820, 75907
Couldn't classify 85383, 85514
Sorry, prediction pasa_asmbl_52205.p1 fails validation.
(CCC)	 CC	75820-75907	GT	TGG
(AGA)	 AG	76169-76296	GT	AGG
(AGA)	 AG	79078-79198	GT	GGG
(GTT)	 AG	82015-82095	GT	GGG
(CTC)	 AG	84987-85144	GT	TGG
(GTG)	 AG	85383-85514	AA	GGA
-recovered pasa_asmbl_52205.p1, internal, 76169, 76296
-recovered pasa_asmbl_52205.p1, internal, 79078, 79198
-recovered pasa_asmbl_52205.p1, internal, 82015, 82095
-recovered pasa_asmbl_52205.p1, internal, 84987, 85144
Valid prediction for GlimmerHMM_glimmerT_20574-T1
Valid prediction for Augustus_model.g13737.t1
Valid prediction for GlimmerHMM_glimmerT_20589-T1
Couldn't classify 91453, 91609
Sorry, prediction pasa_asmbl_52589.p1 fails validation.
(GGT)	 AG	91453-91609	GT	AGG
(CTG)	 AG	91749-91900	TT	AAT
add_exon() Sorry, pasa_asmbl_52589.p1 91453-91609-terminal-3 is invalid.
-recovered pasa_asmbl_52589.p1, terminal, 91453, 91609
-recovered pasa_asmbl_52589.p1, terminal, 91749, 91900
-recovered pasa_asmbl_52589.p1, internal, 91453, 91609
Valid prediction for Augustus_model.g13730.t1
Valid prediction for Augustus_model.g13720.t1
Valid prediction for snap_scaffold_8-snap.2239-T1
Valid prediction for Augustus_model.g13722.t1
Valid prediction for snap_scaffold_8-snap.2267-T1
Valid prediction for Augustus_model.g13734.t1
Valid prediction for snap_scaffold_8-snap.2269-T1
Valid prediction for Augustus_model.g13735.t1
Valid prediction for snap_scaffold_8-snap.2240-T1
Valid prediction for GlimmerHMM_glimmerT_20571-T1
Valid prediction for GlimmerHMM_glimmerT_20580-T1
Valid prediction for snap_scaffold_8-snap.2254-T1
Valid prediction for Augustus_model.g13738.t1
Valid prediction for GlimmerHMM_glimmerT_20586-T1
Valid prediction for snap_scaffold_8-snap.2248-T1
Couldn't classify 213967, 214252
Sorry, prediction pasa_asmbl_52197.p1 fails validation.
(ATG)	 AG	208665-208706	GT	AGG
(GTT)	 AG	208813-208969	GT	AGG
(ATG)	 AG	209110-209231	GT	AGG
(AAA)	 AG	209770-209939	GT	CGG
(GAT)	 AG	210147-210409	GT	TGG
(CCA)	 AG	210615-210838	GT	CGG
(GTT)	 AG	210954-211046	GT	AGG
(ATC)	 AG	211144-211509	GT	AGG
(GTG)	 AG	211680-211769	GT	AGG
(ATG)	 AG	212109-212264	GT	AGG
(GCG)	 AG	212795-213056	GT	CGG
(TGC)	 AG	213412-213572	GT	AGG
(ATC)	 AG	213694-213815	GT	AGG
(GTG)	 AG	213967-214252	TA	GCT
-recovered pasa_asmbl_52197.p1, initial, 208665, 208706
add_exon() Sorry, pasa_asmbl_52197.p1 209110-209231-initial-1 is invalid.
-recovered pasa_asmbl_52197.p1, initial, 209110, 209231
-recovered pasa_asmbl_52197.p1, initial, 212109, 212264
-recovered pasa_asmbl_52197.p1, internal, 208665, 208706
-recovered pasa_asmbl_52197.p1, internal, 208813, 208969
-recovered pasa_asmbl_52197.p1, internal, 209110, 209231
-recovered pasa_asmbl_52197.p1, internal, 209770, 209939
-recovered pasa_asmbl_52197.p1, internal, 210147, 210409
-recovered pasa_asmbl_52197.p1, internal, 210615, 210838
-recovered pasa_asmbl_52197.p1, internal, 210954, 211046
-recovered pasa_asmbl_52197.p1, internal, 211144, 211509
-recovered pasa_asmbl_52197.p1, internal, 211680, 211769
-recovered pasa_asmbl_52197.p1, internal, 212109, 212264
-recovered pasa_asmbl_52197.p1, internal, 212795, 213056
-recovered pasa_asmbl_52197.p1, internal, 213412, 213572
-recovered pasa_asmbl_52197.p1, internal, 213694, 213815
Valid prediction for GlimmerHMM_glimmerT_20570-T1
Valid prediction for snap_scaffold_8-snap.2232-T1
Valid prediction for GlimmerHMM_glimmerT_20582-T1
Valid prediction for GlimmerHMM_glimmerT_20581-T1
Valid prediction for snap_scaffold_8-snap.2234-T1
Valid prediction for snap_scaffold_8-snap.2235-T1
Valid prediction for GlimmerHMM_glimmerT_20573-T1
Valid prediction for CodingQuarry_transcript_59845-T1
Valid prediction for GlimmerHMM_glimmerT_20572-T1
Valid prediction for Augustus_model.g13723.t1
Valid prediction for GlimmerHMM_glimmerT_20592-T1
Valid prediction for snap_scaffold_8-snap.2256-T1
Valid prediction for snap_scaffold_8-snap.2268-T1
Couldn't classify 201631, 201738
Sorry, prediction pasa_asmbl_52200.p1 fails validation.
(ATG)	 CA	198231-198240	GT	AGG
(ATT)	 AG	198656-198759	GT	CGG
(GTT)	 AG	199073-199226	GT	AGG
(ATG)	 AG	199552-199631	GT	AGG
(GCG)	 AG	199828-199887	GT	AGG
(GTG)	 AG	200632-200782	GT	AGG
(TGT)	 AG	200961-201077	GT	GGG
(GTA)	 AG	201373-201476	GC	AAG
(GCG)	 AG	201631-201738	AC	TCA
-recovered pasa_asmbl_52200.p1, initial, 198231, 198240
add_exon() Sorry, pasa_asmbl_52200.p1 199552-199631-initial-1 is invalid.
-recovered pasa_asmbl_52200.p1, initial, 199552, 199631
-recovered pasa_asmbl_52200.p1, internal, 198656, 198759
-recovered pasa_asmbl_52200.p1, internal, 199073, 199226
-recovered pasa_asmbl_52200.p1, internal, 199552, 199631
-recovered pasa_asmbl_52200.p1, internal, 199828, 199887
-recovered pasa_asmbl_52200.p1, internal, 200632, 200782
-recovered pasa_asmbl_52200.p1, internal, 200961, 201077
-recovered pasa_asmbl_52200.p1, internal, 201373, 201476
Valid prediction for Augustus_model.g13733.t1
Valid prediction for GlimmerHMM_glimmerT_20575-T1
Valid prediction for Augustus_model.g13731.t1
Couldn't classify 192462, 192519
Couldn't classify 193949, 193979
Sorry, prediction pasa_asmbl_52629.p1 fails validation.
(AAC)	 AG	192462-192519	GT	CAG
(TAT)	 AG	192916-193043	GT	AGG
(TAC)	 AG	193710-193816	GT	TGG
(GTG)	 AG	193949-193979	GT	AGG
-recovered pasa_asmbl_52629.p1, internal, 192462, 192519
-recovered pasa_asmbl_52629.p1, internal, 192916, 193043
-recovered pasa_asmbl_52629.p1, internal, 193710, 193816
-recovered pasa_asmbl_52629.p1, internal, 193949, 193979
Valid prediction for GlimmerHMM_glimmerT_20568-T1
Valid prediction for Augustus_model.g13721.t1
Couldn't classify 29628, 29948
Sorry, prediction pasa_asmbl_52207.p1 fails validation.
(GAT)	 TG	29628-29948	AT	ACA
Valid prediction for snap_scaffold_8-snap.2253-T1
Valid prediction for snap_scaffold_8-snap.2261-T1
Valid prediction for snap_scaffold_8-snap.2238-T1
Valid prediction for CodingQuarry_transcript_59846-T1
Valid prediction for snap_scaffold_8-snap.2251-T1
Couldn't classify 186648, 186673
Sorry, prediction pasa_asmbl_52202.p1 fails validation.
(ATG)	 CA	178851-178950	GT	AGG
(GAA)	 AG	180398-180441	GT	TGG
(AGT)	 AG	181013-181055	GT	TGG
(GAA)	 AG	183101-183196	GT	AAG
(CAA)	 AG	184856-184957	GT	AGG
(AGA)	 AG	186648-186673	AC	ACA
-recovered pasa_asmbl_52202.p1, initial, 178851, 178950
-recovered pasa_asmbl_52202.p1, internal, 180398, 180441
-recovered pasa_asmbl_52202.p1, internal, 181013, 181055
-recovered pasa_asmbl_52202.p1, internal, 183101, 183196
-recovered pasa_asmbl_52202.p1, internal, 184856, 184957
Valid prediction for snap_scaffold_8-snap.2237-T1
Valid prediction for GlimmerHMM_glimmerT_20584-T1
Valid prediction for Augustus_model.g13727.t1
Valid prediction for GlimmerHMM_glimmerT_20591-T1
Valid prediction for CodingQuarry_transcript_59848-T1
Valid prediction for snap_scaffold_8-snap.2250-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27088, rend_intergenic: 21604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145190, rend_intergenic: 144960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149427, rend_intergenic: 146727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154191, rend_intergenic: 149626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161643, rend_intergenic: 154942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194048, rend_intergenic: 177435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234218, rend_intergenic: 200311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 278181
-exon list size: 477


building trellis

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54.1    
54.3    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.2    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.9    
60.1    
60.3    
60.5    
60.8    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
63.0    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.6    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.8    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.4    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.4    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.5    
77.7    
77.9    
78.1    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
80.0    
80.2    
80.4    
80.6    
80.8    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.6    
84.8    
85.0    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.7    
87.9    
88.1    
88.3    
88.5    
88.7    
88.9    
89.1    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 27088, rend_intergenic: 21604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145190, rend_intergenic: 144960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149427, rend_intergenic: 146727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154191, rend_intergenic: 149626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161643, rend_intergenic: 154942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194048, rend_intergenic: 177435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234218, rend_intergenic: 200311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13583
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 80 - 13583
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1463 - 13583
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1651 - 13583
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 3431 - 13583
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support