-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_11490411-11872297

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_8-snap.2139-T1
Valid prediction for Augustus_model.g13678.t1
Couldn't classify 263056, 263155
Sorry, prediction pasa_asmbl_53260.p1 fails validation.
(CAG)	 GC	263056-263155	GT	AGG
(GTT)	 AG	263320-263417	GT	AGG
(GTG)	 AG	263598-263759	TT	GAT
-recovered pasa_asmbl_53260.p1, terminal, 263598, 263759
-recovered pasa_asmbl_53260.p1, internal, 263320, 263417
Valid prediction for Augustus_model.g13683.t1
Valid prediction for snap_scaffold_8-snap.2174-T1
Valid prediction for snap_scaffold_8-snap.2173-T1
Valid prediction for pasa_asmbl_53259.p1
Valid prediction for HiQ_model.g13669.t1
Valid prediction for Augustus_model.g13666.t1
Valid prediction for CodingQuarry_transcript_59818-T1
Valid prediction for GlimmerHMM_glimmerT_20507-T1
Valid prediction for Augustus_model.g13690.t1
Valid prediction for snap_scaffold_8-snap.2183-T1
Valid prediction for pasa_asmbl_53283.p1
Valid prediction for GlimmerHMM_glimmerT_20524-T1
Valid prediction for Augustus_model.g13692.t1
Valid prediction for snap_scaffold_8-snap.2160-T1
Valid prediction for HiQ_model.g13682.t1
Valid prediction for CodingQuarry_transcript_59833-T1
Valid prediction for CodingQuarry_transcript_59821-T1
Valid prediction for pasa_asmbl_53263.p1
Valid prediction for Augustus_model.g13667.t1
Couldn't classify 313496, 313516
Sorry, prediction pasa_asmbl_53265.p1 fails validation.
(CGG)	 CC	313496-313516	GT	CTG
(GGT)	 AG	313648-313761	GT	AGG
(CTG)	 AG	313864-313930	GT	AGG
(CAG)	 AG	314193-314353	GT	AGG
(TGC)	 AG	314684-315280	GA	GAG
-recovered pasa_asmbl_53265.p1, terminal, 314684, 315280
-recovered pasa_asmbl_53265.p1, internal, 313648, 313761
-recovered pasa_asmbl_53265.p1, internal, 313864, 313930
-recovered pasa_asmbl_53265.p1, internal, 314193, 314353
Valid prediction for snap_scaffold_8-snap.2136-T1
Valid prediction for pasa_asmbl_53252.p1
Valid prediction for snap_scaffold_8-snap.2142-T1
Valid prediction for pasa_asmbl_53239.p1
Valid prediction for GlimmerHMM_glimmerT_20521-T1
Couldn't classify 66890, 66975
Couldn't classify 67472, 68015
Sorry, prediction pasa_asmbl_53230.p1 fails validation.
(CAC)	 GT	66890-66975	GT	AGG
(CTT)	 AG	67472-68015	CC	CCC
Valid prediction for CodingQuarry_transcript_59834-T1
Valid prediction for snap_scaffold_8-snap.2175-T1
Valid prediction for GlimmerHMM_glimmerT_20516-T1
Valid prediction for snap_scaffold_8-snap.2144-T1
Valid prediction for Augustus_model.g13671.t1
Valid prediction for Augustus_model.g13670.t1
Valid prediction for snap_scaffold_8-snap.2137-T1
Valid prediction for snap_scaffold_8-snap.2161-T1
Couldn't classify 121610, 121652
Couldn't classify 122928, 123172
Sorry, prediction pasa_asmbl_53249.p1 fails validation.
(AAC)	 TG	121610-121652	GT	AGG
(GTG)	 AG	121939-122149	GT	AGG
(GCA)	 AG	122377-122543	GT	TTG
(CTC)	 AG	122689-122805	GT	AGG
(GTG)	 AG	122928-123172	GG	AGG
-recovered pasa_asmbl_53249.p1, internal, 121939, 122149
-recovered pasa_asmbl_53249.p1, internal, 122377, 122543
-recovered pasa_asmbl_53249.p1, internal, 122689, 122805
Valid prediction for CodingQuarry_transcript_59822-T1
Valid prediction for CodingQuarry_transcript_59820-T1
Couldn't classify 310398, 310541
Couldn't classify 312881, 312915
Sorry, prediction pasa_asmbl_53264.p1 fails validation.
(ATT)	 TT	310398-310541	GT	AGG
(ACC)	 AG	311001-311063	GT	CTG
(GTG)	 AG	311375-311464	GT	AGG
(CTT)	 AG	311548-311634	GT	TGG
(GAC)	 AG	311727-311831	GT	AGG
(GAC)	 AG	312076-312261	GT	AGG
(GAA)	 AG	312697-312787	GT	AGG
(GGA)	 AG	312881-312915	AC	AGA
-recovered pasa_asmbl_53264.p1, internal, 311001, 311063
-recovered pasa_asmbl_53264.p1, internal, 311375, 311464
-recovered pasa_asmbl_53264.p1, internal, 311548, 311634
-recovered pasa_asmbl_53264.p1, internal, 311727, 311831
-recovered pasa_asmbl_53264.p1, internal, 312076, 312261
-recovered pasa_asmbl_53264.p1, internal, 312697, 312787
Valid prediction for snap_scaffold_8-snap.2180-T1
Valid prediction for snap_scaffold_8-snap.2178-T1
Couldn't classify 73214, 73319
Sorry, prediction pasa_asmbl_53236.p1 fails validation.
(GAG)	 AA	73214-73319	GT	ACG
(TGT)	 AG	73660-73721	GT	AGG
(TAC)	 AG	73967-74159	GT	AGG
(ATG)	 AG	74310-74438	GT	GTG
(GTT)	 AG	74606-74711	GT	AGG
(GAT)	 AG	74907-75038	GT	GCG
(GTG)	 AG	75333-75633	CT	AAC
add_exon() Sorry, pasa_asmbl_53236.p1 74310-74438-initial-1 is invalid.
-recovered pasa_asmbl_53236.p1, initial, 74310, 74438
-recovered pasa_asmbl_53236.p1, terminal, 75333, 75633
-recovered pasa_asmbl_53236.p1, internal, 73660, 73721
-recovered pasa_asmbl_53236.p1, internal, 73967, 74159
-recovered pasa_asmbl_53236.p1, internal, 74310, 74438
-recovered pasa_asmbl_53236.p1, internal, 74606, 74711
-recovered pasa_asmbl_53236.p1, internal, 74907, 75038
Valid prediction for snap_scaffold_8-snap.2159-T1
Valid prediction for HiQ_model.g13668.t1
Valid prediction for Augustus_model.g13680.t1
Valid prediction for HiQ_model.g13688.t1
Couldn't classify 68448, 68819
Sorry, prediction pasa_asmbl_53231.p1 fails validation.
(CTT)	 CT	68448-68819	AG	AGA
Valid prediction for GlimmerHMM_glimmerT_20517-T1
Couldn't classify 69000, 69334
Couldn't classify 72321, 72386
Sorry, prediction pasa_asmbl_53232.p1 fails validation.
(CTG)	 TG	69000-69334	GT	AAG
(GTT)	 AG	69550-69649	GT	AGG
(GTC)	 AG	69956-70168	GT	TGG
(CCA)	 AG	71270-71370	GT	AGG
(GGT)	 AG	71546-71676	GT	GGG
(GAC)	 AG	71827-72047	GT	AGG
(ATC)	 AG	72321-72386	CT	CCC
-recovered pasa_asmbl_53232.p1, internal, 69550, 69649
-recovered pasa_asmbl_53232.p1, internal, 69956, 70168
-recovered pasa_asmbl_53232.p1, internal, 71270, 71370
-recovered pasa_asmbl_53232.p1, internal, 71546, 71676
-recovered pasa_asmbl_53232.p1, internal, 71827, 72047
Valid prediction for HiQ_model.g13695.t1
Valid prediction for GlimmerHMM_glimmerT_20515-T1
Couldn't classify 119746, 119786
Couldn't classify 120461, 120788
Sorry, prediction pasa_asmbl_53248.p2 fails validation.
(TCG)	 CG	119746-119786	GT	AGG
(CTT)	 AG	120461-120788	CG	TCC
Valid prediction for pasa_asmbl_53234.p1
Valid prediction for GlimmerHMM_glimmerT_20509-T1
Valid prediction for GlimmerHMM_glimmerT_20506-T1
Valid prediction for pasa_asmbl_53272.p1
Valid prediction for snap_scaffold_8-snap.2134-T1
Valid prediction for snap_scaffold_8-snap.2148-T1
Valid prediction for snap_scaffold_8-snap.2162-T1
Valid prediction for snap_scaffold_8-snap.2171-T1
Valid prediction for GlimmerHMM_glimmerT_20528-T1
Couldn't classify 117935, 118135
Couldn't classify 119215, 119256
Sorry, prediction pasa_asmbl_53246.p1 fails validation.
(TGT)	 CA	117935-118135	GT	AGG
(GAA)	 AG	118849-118932	GT	AGG
(GTG)	 AG	119215-119256	CT	ACC
-recovered pasa_asmbl_53246.p1, internal, 118849, 118932
Valid prediction for snap_scaffold_8-snap.2145-T1
Valid prediction for snap_scaffold_8-snap.2141-T1
Valid prediction for CodingQuarry_transcript_59829-T1
Couldn't classify 124496, 124710
Couldn't classify 125316, 125461
Sorry, prediction pasa_asmbl_53251.p1 fails validation.
(GCC)	 AG	124496-124710	GT	AGG
(GTA)	 AG	124810-124862	GT	GGG
(AGG)	 AG	124945-125145	GT	AGG
(GAT)	 AG	125316-125461	AT	TCA
add_exon() Sorry, pasa_asmbl_53251.p1 124945-125145-terminal-1 is invalid.
-recovered pasa_asmbl_53251.p1, terminal, 124945, 125145
-recovered pasa_asmbl_53251.p1, internal, 124496, 124710
-recovered pasa_asmbl_53251.p1, internal, 124810, 124862
-recovered pasa_asmbl_53251.p1, internal, 124945, 125145
Valid prediction for GlimmerHMM_glimmerT_20505-T1
Valid prediction for snap_scaffold_8-snap.2138-T1
Valid prediction for snap_scaffold_8-snap.2163-T1
Couldn't classify 349457, 349780
Sorry, prediction pasa_asmbl_52577.p2 fails validation.
(ATG)	 CA	349457-349780	CT	AGC
Valid prediction for snap_scaffold_8-snap.2135-T1
Valid prediction for GlimmerHMM_glimmerT_20531-T1
Couldn't classify 115912, 116080
Couldn't classify 117133, 117210
Sorry, prediction pasa_asmbl_53245.p1 fails validation.
(ACG)	 GC	115912-116080	GT	AGG
(CCC)	 AG	116253-116408	GT	AGG
(GAG)	 AG	116667-116773	GT	AGG
(GTG)	 AG	116882-116992	GT	AGG
(GGA)	 AG	117133-117210	GT	TGG
-recovered pasa_asmbl_53245.p1, internal, 116253, 116408
-recovered pasa_asmbl_53245.p1, internal, 116667, 116773
-recovered pasa_asmbl_53245.p1, internal, 116882, 116992
-recovered pasa_asmbl_53245.p1, internal, 117133, 117210
Valid prediction for GlimmerHMM_glimmerT_20533-T1
Valid prediction for HiQ_model.g13693.t1
Valid prediction for GlimmerHMM_glimmerT_20525-T1
Valid prediction for GlimmerHMM_glimmerT_20530-T1
Valid prediction for snap_scaffold_8-snap.2177-T1
Valid prediction for CodingQuarry_transcript_59826-T1
Couldn't classify 112391, 112513
Couldn't classify 114174, 114418
Sorry, prediction pasa_asmbl_53244.p1 fails validation.
(AGG)	 AC	112391-112513	GT	TGG
(AGC)	 AG	112978-113029	GT	AGG
(GCT)	 AG	114174-114418	CA	AGC
-recovered pasa_asmbl_53244.p1, internal, 112978, 113029
Valid prediction for CodingQuarry_transcript_59830-T1
Couldn't classify 81336, 81456
Couldn't classify 81848, 81936
Sorry, prediction CodingQuarry_transcript_59819-T1 fails validation.
(ATG)	 CA	79913-79969	GT	AGG
(GAT)	 AG	80426-80500	GT	TGG
(GGG)	 AG	80677-80760	GT	AGG
(GTT)	 AG	81102-81222	GT	AGG
(CTC)	 AG	81336-81456	AT	CTA
(GTG)	 GG	81848-81936	GC	AGG
(GTC)	 AG	82091-82146	CA	AGC
-recovered CodingQuarry_transcript_59819-T1, initial, 79913, 79969
-recovered CodingQuarry_transcript_59819-T1, terminal, 82091, 82146
-recovered CodingQuarry_transcript_59819-T1, internal, 80426, 80500
-recovered CodingQuarry_transcript_59819-T1, internal, 80677, 80760
-recovered CodingQuarry_transcript_59819-T1, internal, 81102, 81222
Couldn't classify 250601, 250679
Sorry, prediction pasa_asmbl_53256.p1 fails validation.
(GAG)	 CA	250601-250679	GT	AGG
(GTG)	 AG	250802-250932	GT	AGG
(TTT)	 AG	251130-251243	GT	AGG
(GAC)	 AG	251401-251502	GT	AGG
(AAT)	 AG	251689-252015	CT	GAC
-recovered pasa_asmbl_53256.p1, terminal, 251689, 252015
-recovered pasa_asmbl_53256.p1, internal, 250802, 250932
-recovered pasa_asmbl_53256.p1, internal, 251130, 251243
-recovered pasa_asmbl_53256.p1, internal, 251401, 251502
Valid prediction for GlimmerHMM_glimmerT_20526-T1
Valid prediction for Augustus_model.g13679.t1
Valid prediction for pasa_asmbl_53269.p1
Valid prediction for snap_scaffold_8-snap.2146-T1
Valid prediction for snap_scaffold_8-snap.2150-T1
Valid prediction for snap_scaffold_8-snap.2181-T1
Valid prediction for snap_scaffold_8-snap.2140-T1
Valid prediction for GlimmerHMM_glimmerT_20514-T1
Valid prediction for HiQ_model.g13691.t1
Couldn't classify 79844, 79969
Sorry, prediction pasa_asmbl_53237.p1 fails validation.
(GAC)	 CA	79844-79969	GT	AGG
(GAT)	 AG	80426-80500	GT	TGG
(GGG)	 AG	80677-80760	GT	AGG
(GTT)	 AG	81102-81222	GT	AGG
(CTC)	 AG	81336-81464	GT	GTG
(TTC)	 AG	81777-81936	GC	AGG
(GTC)	 AG	82091-82192	GT	AGG
(TGG)	 AG	82842-82959	GT	TGG
(GTC)	 AG	83211-83357	GA	AGG
-recovered pasa_asmbl_53237.p1, terminal, 83211, 83357
-recovered pasa_asmbl_53237.p1, internal, 80426, 80500
-recovered pasa_asmbl_53237.p1, internal, 80677, 80760
-recovered pasa_asmbl_53237.p1, internal, 81102, 81222
-recovered pasa_asmbl_53237.p1, internal, 81336, 81464
-recovered pasa_asmbl_53237.p1, internal, 81777, 81936
-recovered pasa_asmbl_53237.p1, internal, 82091, 82192
-recovered pasa_asmbl_53237.p1, internal, 82842, 82959
Valid prediction for GlimmerHMM_glimmerT_20522-T1
Valid prediction for Augustus_model.g13665.t1
Valid prediction for snap_scaffold_8-snap.2143-T1
Couldn't classify 109519, 109634
Couldn't classify 110272, 110403
Sorry, prediction pasa_asmbl_53574.p1 fails validation.
(GAT)	 TA	109519-109634	GT	AGG
(GTA)	 AG	109888-110008	GT	GGG
(ATT)	 AG	110272-110403	GA	AGG
-recovered pasa_asmbl_53574.p1, internal, 109888, 110008
Valid prediction for Augustus_model.g13681.t1
Valid prediction for CodingQuarry_transcript_59817-T1
Valid prediction for snap_scaffold_8-snap.2170-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_8-snap.2151-T1
Valid prediction for Augustus_model.g13685.t1
Valid prediction for GlimmerHMM_glimmerT_20532-T1
Valid prediction for Augustus_model.g13664.t1
Valid prediction for pasa_asmbl_52151.p1
Valid prediction for HiQ_model.g13684.t1
Valid prediction for pasa_asmbl_52165.p1
Valid prediction for snap_scaffold_8-snap.2182-T1
Valid prediction for GlimmerHMM_glimmerT_20519-T1
Valid prediction for HiQ_model.g13687.t1
Valid prediction for Augustus_model.g13694.t1
Couldn't classify 31165, 31905
Sorry, prediction pasa_asmbl_52614.p1 fails validation.
(ATG)	 GA	31165-31905	CA	CCC
Valid prediction for Augustus_model.g13677.t1
Valid prediction for snap_scaffold_8-snap.2154-T1
Valid prediction for GlimmerHMM_glimmerT_20529-T1
Valid prediction for GlimmerHMM_glimmerT_20513-T1
Valid prediction for snap_scaffold_8-snap.2184-T1
Valid prediction for GlimmerHMM_glimmerT_20511-T1
Valid prediction for snap_scaffold_8-snap.2156-T1
Valid prediction for snap_scaffold_8-snap.2157-T1
Valid prediction for snap_scaffold_8-snap.2179-T1
Valid prediction for GlimmerHMM_glimmerT_20504-T1
Valid prediction for Augustus_model.g13673.t1
Valid prediction for HiQ_model.g13672.t1
Valid prediction for CodingQuarry_transcript_59835-T1
Valid prediction for pasa_asmbl_52171.p1
Valid prediction for CodingQuarry_transcript_59824-T1
Valid prediction for GlimmerHMM_glimmerT_20527-T1
Couldn't classify 159588, 159750
Sorry, prediction pasa_asmbl_52155.p1 fails validation.
(CGG)	 AA	159588-159750	GT	TGG
(ATT)	 AG	159942-159961	GT	AGG
(TTT)	 AG	160047-160183	GT	CGG
(ACG)	 AG	160319-160518	GT	ATG
(TAA)	 AG	160633-162134	GC	AAG
-recovered pasa_asmbl_52155.p1, terminal, 160633, 162134
-recovered pasa_asmbl_52155.p1, internal, 159942, 159961
-recovered pasa_asmbl_52155.p1, internal, 160047, 160183
-recovered pasa_asmbl_52155.p1, internal, 160319, 160518
-recovered pasa_asmbl_52155.p1, internal, 160633, 162134
Valid prediction for HiQ_model.g13696.t1
Couldn't classify 194433, 194582
Sorry, prediction pasa_asmbl_52154.p1 fails validation.
(TGT)	 GT	194433-194582	GT	TGG
(TAT)	 AG	195303-195377	GT	TGG
(CTG)	 AG	196603-196701	GT	CAG
(ATG)	 AG	196931-197104	GT	CGG
(GGA)	 AG	197249-197332	GT	AGG
(CTT)	 AG	197622-197699	AG	GAA
-recovered pasa_asmbl_52154.p1, initial, 196931, 197104
-recovered pasa_asmbl_52154.p1, terminal, 197622, 197699
-recovered pasa_asmbl_52154.p1, internal, 195303, 195377
-recovered pasa_asmbl_52154.p1, internal, 196603, 196701
-recovered pasa_asmbl_52154.p1, internal, 196931, 197104
-recovered pasa_asmbl_52154.p1, internal, 197249, 197332
Valid prediction for CodingQuarry_transcript_59827-T1
Valid prediction for snap_scaffold_8-snap.2176-T1
Valid prediction for GlimmerHMM_glimmerT_20520-T1
Valid prediction for snap_scaffold_8-snap.2133-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for Augustus_model.g13676.t1
Valid prediction for CodingQuarry_transcript_59823-T1
Valid prediction for GlimmerHMM_glimmerT_20510-T1
Valid prediction for CodingQuarry_transcript_59828-T1
Valid prediction for Augustus_model.g13689.t1
Valid prediction for pasa_asmbl_52168.p1
Valid prediction for GlimmerHMM_glimmerT_20523-T1
Valid prediction for Augustus_model.g13674.t1
Valid prediction for snap_scaffold_8-snap.2167-T1
Valid prediction for GlimmerHMM_glimmerT_20508-T1
Valid prediction for Augustus_model.g13686.t1
Valid prediction for GlimmerHMM_glimmerT_20512-T1
Valid prediction for GlimmerHMM_glimmerT_20518-T1
Valid prediction for snap_scaffold_8-snap.2152-T1
Valid prediction for snap_scaffold_8-snap.2155-T1
Valid prediction for Augustus_model.g13675.t1
Valid prediction for CodingQuarry_transcript_59825-T1
Valid prediction for snap_scaffold_8-snap.2149-T1
Valid prediction for snap_scaffold_8-snap.2158-T1
Valid prediction for snap_scaffold_8-snap.2164-T1
Valid prediction for snap_scaffold_8-snap.2166-T1
Valid prediction for snap_scaffold_8-snap.2165-T1
Couldn't classify 159030, 159171
Sorry, prediction pasa_asmbl_52157.p1 fails validation.
(ATG)	 GT	158429-158603	GT	CCG
(GGT)	 AG	158783-158930	GT	AGG
(GTT)	 AG	159030-159171	CA	CCC
-recovered pasa_asmbl_52157.p1, initial, 158429, 158603
-recovered pasa_asmbl_52157.p1, internal, 158783, 158930
Valid prediction for snap_scaffold_8-snap.2153-T1
Valid prediction for GlimmerHMM_glimmerT_20534-T1
Valid prediction for snap_scaffold_8-snap.2168-T1
Valid prediction for snap_scaffold_8-snap.2147-T1
Valid prediction for snap_scaffold_8-snap.2169-T1
Valid prediction for snap_scaffold_8-snap.2172-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 110451, rend_intergenic: 104816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137983, rend_intergenic: 134927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 381887
-exon list size: 599


building trellis

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18.8    
19.0    
19.1    
19.3    
19.5    
19.6    
19.8    
20.0    
20.1    
20.3    
20.5    
20.6    
20.8    
21.0    
21.1    
21.3    
21.5    
21.6    
21.8    
22.0    
22.1    
22.3    
22.5    
22.6    
22.8    
23.0    
23.1    
23.3    
23.5    
23.6    
23.8    
24.0    
24.1    
24.3    
24.5    
24.6    
24.8    
25.0    
25.1    
25.3    
25.5    
25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.6    
26.8    
27.0    
27.1    
27.3    
27.5    
27.6    
27.8    
28.0    
28.1    
28.3    
28.5    
28.6    
28.8    
29.0    
29.1    
29.3    
29.5    
29.6    
29.8    
30.0    
30.1    
30.3    
30.4    
30.6    
30.8    
30.9    
31.1    
31.3    
31.4    
31.6    
31.8    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.4    
34.6    
34.8    
34.9    
35.1    
35.3    
35.4    
35.6    
35.8    
35.9    
36.1    
36.3    
36.4    
36.6    
36.8    
36.9    
37.1    
37.3    
37.4    
37.6    
37.8    
37.9    
38.1    
38.3    
38.4    
38.6    
38.8    
38.9    
39.1    
39.3    
39.4    
39.6    
39.8    
39.9    
40.1    
40.3    
40.4    
40.6    
40.8    
40.9    
41.1    
41.3    
41.4    
41.6    
41.8    
41.9    
42.1    
42.3    
42.4    
42.6    
42.8    
42.9    
43.1    
43.3    
43.4    
43.6    
43.8    
43.9    
44.1    
44.3    
44.4    
44.6    
44.8    
44.9    
45.1    
45.3    
45.4    
45.6    
45.8    
45.9    
46.1    
46.3    
46.4    
46.6    
46.8    
46.9    
47.1    
47.3    
47.4    
47.6    
47.8    
47.9    
48.1    
48.3    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.4    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.6    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.7    
51.9    
52.1    
52.2    
52.4    
52.6    
52.7    
52.9    
53.1    
53.2    
53.4    
53.6    
53.7    
53.9    
54.1    
54.2    
54.4    
54.6    
54.7    
54.9    
55.1    
55.2    
55.4    
55.6    
55.7    
55.9    
56.1    
56.2    
56.4    
56.6    
56.7    
56.9    
57.1    
57.2    
57.4    
57.6    
57.7    
57.9    
58.1    
58.2    
58.4    
58.6    
58.7    
58.9    
59.1    
59.2    
59.4    
59.6    
59.7    
59.9    
60.1    
60.2    
60.4    
60.6    
60.7    
60.9    
61.1    
61.2    
61.4    
61.6    
61.7    
61.9    
62.1    
62.2    
62.4    
62.6    
62.7    
62.9    
63.1    
63.2    
63.4    
63.6    
63.7    
63.9    
64.1    
64.2    
64.4    
64.6    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.6    
67.7    
67.9    
68.1    
68.2    
68.4    
68.6    
68.7    
68.9    
69.1    
69.2    
69.4    
69.6    
69.7    
69.9    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.0    
71.2    
71.4    
71.5    
71.7    
71.9    
72.0    
72.2    
72.4    
72.5    
72.7    
72.9    
73.0    
73.2    
73.4    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.5    
75.7    
75.9    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.0    
77.2    
77.4    
77.5    
77.7    
77.9    
78.0    
78.2    
78.4    
78.5    
78.7    
78.9    
79.0    
79.2    
79.4    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.0    
81.2    
81.4    
81.5    
81.7    
81.9    
82.0    
82.2    
82.4    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.5    
83.7    
83.9    
84.0    
84.2    
84.4    
84.5    
84.7    
84.9    
85.0    
85.2    
85.4    
85.5    
85.7    
85.9    
86.0    
86.2    
86.4    
86.5    
86.7    
86.9    
87.0    
87.2    
87.4    
87.5    
87.7    
87.9    
88.0    
88.2    
88.4    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.5    
89.7    
89.9    
90.0    
90.2    
90.3    
90.5    
90.7    
90.8    
91.0    
91.2    
91.3    
91.5    
91.7    
91.8    
92.0    
92.2    
92.3    
92.5    
92.7    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.8    
95.0    
95.2    
95.3    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.7    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 110451, rend_intergenic: 104816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137983, rend_intergenic: 134927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 37 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 367281 - 381887
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 371278 - 381887
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support