-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_8/scaffold_8_10968069-11491924 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_20469-T1 Valid prediction for pasa_asmbl_53226.p1 Valid prediction for snap_scaffold_8-snap.2114-T1 Couldn't classify 271607, 271790 Sorry, prediction pasa_asmbl_53204.p1 fails validation. (GGT) AC 271607-271790 GT CGG (CTA) AG 273961-274084 GT GGG (ATC) AG 274173-274280 GT AGG (GCT) AG 274716-274847 GT AGG (AGA) AG 275128-275303 GT AGG (GAG) AG 275425-275622 GT TGG (CCA) AG 276030-276175 GT AGG (GAG) AG 276272-276304 AG AGA -recovered pasa_asmbl_53204.p1, terminal, 276272, 276304 -recovered pasa_asmbl_53204.p1, internal, 273961, 274084 -recovered pasa_asmbl_53204.p1, internal, 274173, 274280 -recovered pasa_asmbl_53204.p1, internal, 274716, 274847 -recovered pasa_asmbl_53204.p1, internal, 275128, 275303 -recovered pasa_asmbl_53204.p1, internal, 275425, 275622 -recovered pasa_asmbl_53204.p1, internal, 276030, 276175 Valid prediction for GlimmerHMM_glimmerT_20497-T1 Valid prediction for snap_scaffold_8-snap.2105-T1 Valid prediction for GlimmerHMM_glimmerT_20489-T1 Valid prediction for snap_scaffold_8-snap.2126-T1 Valid prediction for pasa_asmbl_53209.p1 Valid prediction for snap_scaffold_8-snap.2112-T1 Valid prediction for CodingQuarry_transcript_59815-T1 Couldn't classify 90290, 90489 Sorry, prediction pasa_asmbl_53194.p1 fails validation. (GAG) TA 90290-90489 GT GGG (GCA) AG 90811-90916 GT GGG (GTG) AG 91279-91475 GT GAG (CGT) AG 91855-92021 GT TGG (GAG) AG 92152-92312 AT AGA -recovered pasa_asmbl_53194.p1, terminal, 92152, 92312 -recovered pasa_asmbl_53194.p1, internal, 90811, 90916 -recovered pasa_asmbl_53194.p1, internal, 91279, 91475 -recovered pasa_asmbl_53194.p1, internal, 91855, 92021 Valid prediction for pasa_asmbl_53221.p1 Valid prediction for HiQ_model.g13646.t1 Valid prediction for snap_scaffold_8-snap.2081-T1 Valid prediction for GlimmerHMM_glimmerT_20484-T1 Valid prediction for GlimmerHMM_glimmerT_20470-T1 Valid prediction for snap_scaffold_8-snap.2128-T1 Valid prediction for HiQ_model.g13650.t1 Valid prediction for Augustus_model.g13656.t1 Valid prediction for snap_scaffold_8-snap.2099-T1 Couldn't classify 282009, 282113 Sorry, prediction pasa_asmbl_53207.p1 fails validation. (GTT) CT 282009-282113 GT AGG (AAG) AG 282257-282409 GT TGG (CTT) AG 282561-282716 GT AGG (AAG) AG 282897-282983 GT AGG (GTG) AG 283182-283300 GT GGG (GAA) AG 283480-283690 GT AGG (GTT) AG 283798-283914 GT AGG (CTG) AG 284083-284321 GT AGG (GTT) AG 284427-284610 GT AGG (CGC) AG 284813-285395 GT TAG (TGG) AG 285506-285675 GT AGG (CTC) AG 285972-286145 GT AGG (CTG) AG 286403-286495 GT AGG (CGG) AG 287034-287132 GG GAG -recovered pasa_asmbl_53207.p1, terminal, 287034, 287132 -recovered pasa_asmbl_53207.p1, internal, 282257, 282409 -recovered pasa_asmbl_53207.p1, internal, 282561, 282716 -recovered pasa_asmbl_53207.p1, internal, 282897, 282983 -recovered pasa_asmbl_53207.p1, internal, 283182, 283300 -recovered pasa_asmbl_53207.p1, internal, 283480, 283690 -recovered pasa_asmbl_53207.p1, internal, 283798, 283914 -recovered pasa_asmbl_53207.p1, internal, 284083, 284321 -recovered pasa_asmbl_53207.p1, internal, 284427, 284610 -recovered pasa_asmbl_53207.p1, internal, 284813, 285395 -recovered pasa_asmbl_53207.p1, internal, 285506, 285675 -recovered pasa_asmbl_53207.p1, internal, 285972, 286145 -recovered pasa_asmbl_53207.p1, internal, 286403, 286495 Valid prediction for GlimmerHMM_glimmerT_20502-T1 Couldn't classify 460060, 460641 Sorry, prediction pasa_asmbl_53225.p1 fails validation. (ATG) AA 460060-460641 GG GGG Couldn't classify 225773, 225875 Couldn't classify 226558, 226681 Sorry, prediction pasa_asmbl_53201.p1 fails validation. (ATG) CG 211623-211683 GT AGG (GCC) AG 212572-212720 GT AGG (GGT) AG 212834-212950 GT AGG (GAC) AG 213082-213303 GT AGG (GAT) AG 213497-213611 GT AGG (TCC) AG 213956-214053 GT AGG (CAA) AG 214404-214562 GT AGG (ACC) AG 214813-214896 GT AAG (CTC) AG 215295-215411 GT AGG (TTG) AG 215893-215995 GT AGG (GAC) AG 216820-216895 GT AGG (AGT) AG 217251-217359 GT AGG (ATC) AG 217963-218141 GT AGG (CAC) AG 218466-218626 GT CGG (AGA) AG 218798-218905 GT AGG (GTG) AG 219123-219330 GT AGG (TCT) AG 219591-219686 GT AGG (GAG) AG 219995-220106 GT AGG (GCC) AG 221829-221952 GT AGG (TCC) AG 222157-222321 GT TGG (GTA) AG 222731-222825 GT CAG (GTG) AG 223605-223775 GT AGG (ATA) AG 224317-224426 GT AGG (CGC) AG 224791-224960 GT CGG (GTC) AG 225773-225875 AT TTA (CTG) AC 226558-226681 GT AGG (ATT) AG 226865-226948 CC AGC -recovered pasa_asmbl_53201.p1, initial, 211623, 211683 -recovered pasa_asmbl_53201.p1, terminal, 226865, 226948 -recovered pasa_asmbl_53201.p1, internal, 212572, 212720 -recovered pasa_asmbl_53201.p1, internal, 212834, 212950 -recovered pasa_asmbl_53201.p1, internal, 213082, 213303 -recovered pasa_asmbl_53201.p1, internal, 213497, 213611 -recovered pasa_asmbl_53201.p1, internal, 213956, 214053 -recovered pasa_asmbl_53201.p1, internal, 214404, 214562 -recovered pasa_asmbl_53201.p1, internal, 214813, 214896 -recovered pasa_asmbl_53201.p1, internal, 215295, 215411 -recovered pasa_asmbl_53201.p1, internal, 215893, 215995 -recovered pasa_asmbl_53201.p1, internal, 216820, 216895 -recovered pasa_asmbl_53201.p1, internal, 217251, 217359 -recovered pasa_asmbl_53201.p1, internal, 217963, 218141 -recovered pasa_asmbl_53201.p1, internal, 218466, 218626 -recovered pasa_asmbl_53201.p1, internal, 218798, 218905 -recovered pasa_asmbl_53201.p1, internal, 219123, 219330 -recovered pasa_asmbl_53201.p1, internal, 219591, 219686 -recovered pasa_asmbl_53201.p1, internal, 219995, 220106 -recovered pasa_asmbl_53201.p1, internal, 221829, 221952 -recovered pasa_asmbl_53201.p1, internal, 222157, 222321 -recovered pasa_asmbl_53201.p1, internal, 222731, 222825 -recovered pasa_asmbl_53201.p1, internal, 223605, 223775 -recovered pasa_asmbl_53201.p1, internal, 224317, 224426 -recovered pasa_asmbl_53201.p1, internal, 224791, 224960 Valid prediction for GlimmerHMM_glimmerT_20496-T1 Valid prediction for snap_scaffold_8-snap.2131-T1 Valid prediction for HiQ_model.g13632.t1 Valid prediction for HiQ_model.g13638.t1 Valid prediction for GlimmerHMM_glimmerT_20483-T1 Couldn't classify 383113, 384459 Couldn't classify 387077, 387220 Sorry, prediction pasa_asmbl_53611.p1 fails validation. (TCT) AA 383113-384459 GT CAG (TGT) AG 385120-385272 GT AGG (TGC) AG 385459-385632 GT AGG (TGC) AG 385793-385939 GT AGG (TGC) AG 387077-387220 TG AGT -recovered pasa_asmbl_53611.p1, internal, 385120, 385272 -recovered pasa_asmbl_53611.p1, internal, 385459, 385632 -recovered pasa_asmbl_53611.p1, internal, 385793, 385939 Valid prediction for snap_scaffold_8-snap.2129-T1 Valid prediction for Augustus_model.g13663.t1 Valid prediction for HiQ_model.g13647.t1 Valid prediction for snap_scaffold_8-snap.2113-T1 Valid prediction for HiQ_model.g13634.t1 Valid prediction for CodingQuarry_transcript_59804-T1 Valid prediction for GlimmerHMM_glimmerT_20472-T1 Valid prediction for pasa_asmbl_53196.p1 Valid prediction for GlimmerHMM_glimmerT_20480-T1 Valid prediction for snap_scaffold_8-snap.2083-T1 Valid prediction for GlimmerHMM_glimmerT_20481-T1 Valid prediction for GlimmerHMM_glimmerT_20495-T1 Valid prediction for GlimmerHMM_glimmerT_20503-T1 Valid prediction for GlimmerHMM_glimmerT_20493-T1 Valid prediction for snap_scaffold_8-snap.2130-T1 Valid prediction for Augustus_model.g13659.t1 Valid prediction for snap_scaffold_8-snap.2117-T1 Couldn't classify 415063, 415092 Sorry, prediction pasa_asmbl_53223.p1 fails validation. (ATG) CC 411016-411098 GT CAG (ATA) AG 411486-411667 GT AGG (ATG) AG 411951-412081 GC AGG (GCC) AG 412198-412416 GT TGG (GTG) AG 412587-412665 GT AGG (AGG) AG 412753-412855 GT AGG (TGT) AG 413032-413247 GT AAG (GTT) AG 413373-413502 GT AGG (TGG) AG 413873-414060 GT AGG (AGT) AG 414296-414420 GT AGG (ATC) AG 414620-414711 GT AGG (TCA) AG 415063-415092 GC GAG -recovered pasa_asmbl_53223.p1, initial, 411016, 411098 add_exon() Sorry, pasa_asmbl_53223.p1 411951-412081-initial-1 is invalid. -recovered pasa_asmbl_53223.p1, initial, 411951, 412081 -recovered pasa_asmbl_53223.p1, internal, 411486, 411667 -recovered pasa_asmbl_53223.p1, internal, 411951, 412081 -recovered pasa_asmbl_53223.p1, internal, 412198, 412416 -recovered pasa_asmbl_53223.p1, internal, 412587, 412665 -recovered pasa_asmbl_53223.p1, internal, 412753, 412855 -recovered pasa_asmbl_53223.p1, internal, 413032, 413247 -recovered pasa_asmbl_53223.p1, internal, 413373, 413502 -recovered pasa_asmbl_53223.p1, internal, 413873, 414060 -recovered pasa_asmbl_53223.p1, internal, 414296, 414420 -recovered pasa_asmbl_53223.p1, internal, 414620, 414711 -recovered pasa_asmbl_53223.p1, internal, 415063, 415092 Couldn't classify 200094, 200280 Sorry, prediction pasa_asmbl_53199.p1 fails validation. (GAA) CT 200094-200280 GT AGG (ACC) AG 200476-201536 AG AGA -recovered pasa_asmbl_53199.p1, terminal, 200476, 201536 Valid prediction for snap_scaffold_8-snap.2122-T1 Valid prediction for HiQ_model.g13644.t1 Valid prediction for snap_scaffold_8-snap.2085-T1 Valid prediction for snap_scaffold_8-snap.2104-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_20478-T1 Valid prediction for Augustus_model.g13661.t1 Valid prediction for snap_scaffold_8-snap.2116-T1 Valid prediction for snap_scaffold_8-snap.2121-T1 Valid prediction for CodingQuarry_transcript_59812-T1 Valid prediction for CodingQuarry_transcript_59800-T1 Valid prediction for snap_scaffold_8-snap.2103-T1 Valid prediction for pasa_asmbl_53189.p1 Valid prediction for Augustus_model.g13653.t1 Valid prediction for HiQ_model.g13643.t1 Valid prediction for pasa_asmbl_53200.p1 Valid prediction for Augustus_model.g13631.t1 Valid prediction for Augustus_model.g13662.t1 Valid prediction for snap_scaffold_8-snap.2123-T1 Valid prediction for Augustus_model.g13657.t1 Couldn't classify 281862, 281897 Sorry, prediction pasa_asmbl_53205.p1 fails validation. (ATG) CA 280443-280628 GT AGG (GTT) AG 280881-281063 GT AGG (GTT) AG 281180-281286 GT AGG (TAT) AG 281422-281731 GT AGG (CCG) AG 281862-281897 CC AGC -recovered pasa_asmbl_53205.p1, initial, 280443, 280628 -recovered pasa_asmbl_53205.p1, internal, 280881, 281063 -recovered pasa_asmbl_53205.p1, internal, 281180, 281286 -recovered pasa_asmbl_53205.p1, internal, 281422, 281731 Valid prediction for snap_scaffold_8-snap.2110-T1 Valid prediction for snap_scaffold_8-snap.2100-T1 Valid prediction for snap_scaffold_8-snap.2093-T1 Valid prediction for GlimmerHMM_glimmerT_20485-T1 Valid prediction for snap_scaffold_8-snap.2127-T1 Valid prediction for snap_scaffold_8-snap.2132-T1 Valid prediction for snap_scaffold_8-snap.2095-T1 Valid prediction for snap_scaffold_8-snap.2115-T1 Valid prediction for snap_scaffold_8-snap.2125-T1 Valid prediction for Augustus_model.g13654.t1 Valid prediction for Augustus_model.g13655.t1 Valid prediction for snap_scaffold_8-snap.2111-T1 Valid prediction for HiQ_model.g13652.t1 Valid prediction for snap_scaffold_8-snap.2118-T1 Valid prediction for GlimmerHMM_glimmerT_20488-T1 Valid prediction for pasa_asmbl_53214.p1 Valid prediction for snap_scaffold_8-snap.2097-T1 Valid prediction for snap_scaffold_8-snap.2098-T1 Valid prediction for Augustus_model.g13642.t1 Valid prediction for snap_scaffold_8-snap.2119-T1 Valid prediction for CodingQuarry_transcript_59814-T1 Couldn't classify 370565, 370633 Couldn't classify 372314, 372489 Sorry, prediction pasa_asmbl_53608.p1 fails validation. (GTT) CA 370565-370633 GT AGG (AAT) AG 371949-372069 GT TGG (GCT) AG 372314-372489 TA CCT -recovered pasa_asmbl_53608.p1, internal, 371949, 372069 Valid prediction for snap_scaffold_8-snap.2109-T1 Couldn't classify 225773, 225875 Couldn't classify 226558, 226681 Sorry, prediction CodingQuarry_transcript_59806-T1 fails validation. (ATG) CG 211623-211683 GT AGG (GCC) AG 212572-212720 GT AGG (GGT) AG 212834-212950 GT AGG (GAC) AG 213082-213303 GT AGG (GAT) AG 213497-213611 GT AGG (TCC) AG 213956-214053 GT AGG (CAA) AG 214404-214562 GT AGG (ACC) AG 214813-214896 GT AAG (CTC) AG 215295-215411 GT AGG (TTG) AG 215893-215995 GT AGG (GAC) AG 216820-216895 GT AGG (AGT) AG 217251-217359 GT AGG (ATC) AG 217963-218141 GT AGG (CAC) AG 218466-218626 GT CGG (AGA) AG 218798-218905 GT AGG (GTG) AG 219123-219330 GT AGG (TCT) AG 219591-219686 GT AGG (GAG) AG 219995-220106 GT AGG (GCC) AG 221829-221952 GT AGG (TCC) AG 222157-222321 GT TGG (GTA) AG 222731-222825 GT CAG (GTG) AG 223605-223775 GT AGG (ATA) AG 224317-224426 GT AGG (CGC) AG 224791-224960 GT CGG (GTC) AG 225773-225875 AT TTA (CTG) AC 226558-226681 GT AGG (ATT) AG 226865-226948 CC AGC -recovered CodingQuarry_transcript_59806-T1, initial, 211623, 211683 -recovered CodingQuarry_transcript_59806-T1, terminal, 226865, 226948 -recovered CodingQuarry_transcript_59806-T1, internal, 212572, 212720 -recovered CodingQuarry_transcript_59806-T1, internal, 212834, 212950 -recovered CodingQuarry_transcript_59806-T1, internal, 213082, 213303 -recovered CodingQuarry_transcript_59806-T1, internal, 213497, 213611 -recovered CodingQuarry_transcript_59806-T1, internal, 213956, 214053 -recovered CodingQuarry_transcript_59806-T1, internal, 214404, 214562 -recovered CodingQuarry_transcript_59806-T1, internal, 214813, 214896 -recovered CodingQuarry_transcript_59806-T1, internal, 215295, 215411 -recovered CodingQuarry_transcript_59806-T1, internal, 215893, 215995 -recovered CodingQuarry_transcript_59806-T1, internal, 216820, 216895 -recovered CodingQuarry_transcript_59806-T1, internal, 217251, 217359 -recovered CodingQuarry_transcript_59806-T1, internal, 217963, 218141 -recovered CodingQuarry_transcript_59806-T1, internal, 218466, 218626 -recovered CodingQuarry_transcript_59806-T1, internal, 218798, 218905 -recovered CodingQuarry_transcript_59806-T1, internal, 219123, 219330 -recovered CodingQuarry_transcript_59806-T1, internal, 219591, 219686 -recovered CodingQuarry_transcript_59806-T1, internal, 219995, 220106 -recovered CodingQuarry_transcript_59806-T1, internal, 221829, 221952 -recovered CodingQuarry_transcript_59806-T1, internal, 222157, 222321 -recovered CodingQuarry_transcript_59806-T1, internal, 222731, 222825 -recovered CodingQuarry_transcript_59806-T1, internal, 223605, 223775 -recovered CodingQuarry_transcript_59806-T1, internal, 224317, 224426 -recovered CodingQuarry_transcript_59806-T1, internal, 224791, 224960 Valid prediction for GlimmerHMM_glimmerT_20501-T1 Valid prediction for Augustus_model.g13640.t1 Valid prediction for snap_scaffold_8-snap.2082-T1 Valid prediction for HiQ_model.g13658.t1 Valid prediction for GlimmerHMM_glimmerT_20498-T1 Valid prediction for GlimmerHMM_glimmerT_20500-T1 Valid prediction for snap_scaffold_8-snap.2124-T1 Valid prediction for snap_scaffold_8-snap.2106-T1 Valid prediction for snap_scaffold_8-snap.2120-T1 Valid prediction for GlimmerHMM_glimmerT_20490-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_20486-T1 Valid prediction for Augustus_model.g13645.t1 Valid prediction for HiQ_model.g13648.t1 Valid prediction for snap_scaffold_8-snap.2091-T1 Couldn't classify 408776, 408872 Couldn't classify 409834, 410015 Sorry, prediction pasa_asmbl_52130.p1 fails validation. (GGT) CA 408776-408872 GT CAG (ACG) AG 409038-409197 GT AGG (CAG) AG 409480-409580 GT AAG (GCG) AG 409834-410015 AG CCA -recovered pasa_asmbl_52130.p1, internal, 409038, 409197 -recovered pasa_asmbl_52130.p1, internal, 409480, 409580 Valid prediction for snap_scaffold_8-snap.2084-T1 Valid prediction for pasa_asmbl_52132.p1 Valid prediction for CodingQuarry_transcript_59809-T1 Valid prediction for CodingQuarry_transcript_59803-T1 Valid prediction for CodingQuarry_transcript_59808-T1 Valid prediction for snap_scaffold_8-snap.2108-T1 Couldn't classify 414396, 414505 Sorry, prediction pasa_asmbl_52128.p1 fails validation. (GGT) AA 414396-414505 GT AGG (TGA) AG 414754-414940 GT TGG (GAG) AG 415050-415200 GT AGG (ACC) AG 415522-415725 GT TGG (GAG) AG 418511-418614 GT AGG (AAG) AG 418807-418890 GT TGG (ATA) AG 419334-419486 GT TTG (GGT) AG 419733-419853 GT GGG (GTA) AG 420794-420914 GT AGG (GTA) AG 421089-421194 GT AGG (GTG) AG 421315-421425 GT CGG (AAT) AG 421536-421643 GT AGG (GTT) AG 421866-422030 GT AGG (TGT) AG 422283-422355 GT AGG (GTC) AG 422597-422703 GT AGG (GTT) AG 425226-425295 GT TGG (TTC) AG 427467-427513 GT TGG (GCG) AG 427964-428077 TA AGT -recovered pasa_asmbl_52128.p1, terminal, 427964, 428077 -recovered pasa_asmbl_52128.p1, internal, 414754, 414940 -recovered pasa_asmbl_52128.p1, internal, 415050, 415200 -recovered pasa_asmbl_52128.p1, internal, 415522, 415725 -recovered pasa_asmbl_52128.p1, internal, 418511, 418614 -recovered pasa_asmbl_52128.p1, internal, 418807, 418890 -recovered pasa_asmbl_52128.p1, internal, 419334, 419486 -recovered pasa_asmbl_52128.p1, internal, 419733, 419853 -recovered pasa_asmbl_52128.p1, internal, 420794, 420914 -recovered pasa_asmbl_52128.p1, internal, 421089, 421194 -recovered pasa_asmbl_52128.p1, internal, 421315, 421425 -recovered pasa_asmbl_52128.p1, internal, 421536, 421643 -recovered pasa_asmbl_52128.p1, internal, 421866, 422030 -recovered pasa_asmbl_52128.p1, internal, 422283, 422355 -recovered pasa_asmbl_52128.p1, internal, 422597, 422703 -recovered pasa_asmbl_52128.p1, internal, 425226, 425295 -recovered pasa_asmbl_52128.p1, internal, 427467, 427513 Valid prediction for Augustus_model.g13639.t1 Valid prediction for snap_scaffold_8-snap.2088-T1 Valid prediction for GlimmerHMM_glimmerT_20474-T1 Valid prediction for GlimmerHMM_glimmerT_20491-T1 Valid prediction for Augustus_model.g13651.t1 Valid prediction for CodingQuarry_transcript_59810-T1 Valid prediction for GlimmerHMM_glimmerT_20479-T1 Valid prediction for HiQ_model.g13641.t1 Valid prediction for snap_scaffold_8-snap.2089-T1 Valid prediction for GlimmerHMM_glimmerT_20471-T1 Valid prediction for GlimmerHMM_glimmerT_20487-T1 Valid prediction for GlimmerHMM_glimmerT_20468-T1 Valid prediction for Augustus_model.g13633.t1 Valid prediction for GlimmerHMM_glimmerT_20473-T1 Valid prediction for pasa_asmbl_52134.p1 Valid prediction for GlimmerHMM_glimmerT_20476-T1 Valid prediction for Augustus_model.g13649.t1 Valid prediction for snap_scaffold_8-snap.2102-T1 Valid prediction for GlimmerHMM_glimmerT_20492-T1 Valid prediction for GlimmerHMM_glimmerT_20482-T1 Valid prediction for Augustus_model.g13660.t1 Valid prediction for CodingQuarry_transcript_59802-T1 Valid prediction for snap_scaffold_8-snap.2086-T1 Valid prediction for CodingQuarry_transcript_59813-T1 Valid prediction for GlimmerHMM_glimmerT_20499-T1 Valid prediction for CodingQuarry_transcript_59807-T1 Valid prediction for GlimmerHMM_glimmerT_20477-T1 Valid prediction for snap_scaffold_8-snap.2087-T1 Valid prediction for Augustus_model.g13636.t1 Valid prediction for snap_scaffold_8-snap.2101-T1 Valid prediction for GlimmerHMM_glimmerT_20475-T1 Valid prediction for Augustus_model.g13635.t1 Valid prediction for snap_scaffold_8-snap.2107-T1 Valid prediction for CodingQuarry_transcript_59805-T1 Couldn't classify 226063, 226222 Sorry, prediction pasa_asmbl_52138.p1 fails validation. (AGG) AG 226063-226222 GT TGG (GAG) AG 227879-228057 GT AGG (AGC) AG 228467-228580 GT TGG (ACA) AG 230943-230993 CA AAC -recovered pasa_asmbl_52138.p1, terminal, 230943, 230993 -recovered pasa_asmbl_52138.p1, internal, 226063, 226222 -recovered pasa_asmbl_52138.p1, internal, 227879, 228057 -recovered pasa_asmbl_52138.p1, internal, 228467, 228580 Couldn't classify 400657, 400706 Couldn't classify 400861, 401149 Sorry, prediction pasa_asmbl_52634.p1 fails validation. (AAG) AA 400657-400706 GT AGG (ACA) AG 400861-401149 GC AGG -recovered pasa_asmbl_52634.p1, internal, 400861, 401149 Valid prediction for CodingQuarry_transcript_59811-T1 Valid prediction for snap_scaffold_8-snap.2096-T1 Valid prediction for CodingQuarry_transcript_59801-T1 Valid prediction for snap_scaffold_8-snap.2094-T1 Valid prediction for snap_scaffold_8-snap.2090-T1 Valid prediction for pasa_asmbl_52141.p1 Couldn't classify 410330, 410415 Couldn't classify 412912, 412937 Sorry, prediction pasa_asmbl_52129.p1 fails validation. (GGT) AC 410330-410415 GT AAG (GGC) AG 410548-410678 GT CAG (GTA) AG 410779-410880 GT AGG (ATG) AG 411925-411945 GT GGG (TAT) AG 412912-412937 AT ACA -recovered pasa_asmbl_52129.p1, initial, 411925, 411945 -recovered pasa_asmbl_52129.p1, internal, 410548, 410678 -recovered pasa_asmbl_52129.p1, internal, 410779, 410880 -recovered pasa_asmbl_52129.p1, internal, 411925, 411945 Valid prediction for GlimmerHMM_glimmerT_20494-T1 Valid prediction for snap_scaffold_8-snap.2092-T1 Valid prediction for HiQ_model.g13637.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 84156, rend_intergenic: 84153 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 523856 -exon list size: 507 building trellis 0.2 0.4 0.6 0.8 1.0 1.2 1.4 1.6 1.8 2.0 2.2 2.4 2.6 2.8 2.9 3.1 3.3 3.5 3.7 3.9 4.1 4.3 4.5 4.7 4.9 5.1 5.3 5.5 5.7 5.9 6.1 6.3 6.5 6.7 6.9 7.1 7.3 7.5 7.7 7.9 8.1 8.3 8.4 8.6 8.8 9.0 9.2 9.4 9.6 9.8 10.0 10.2 10.4 10.6 10.8 11.0 11.2 11.4 11.6 11.8 12.0 12.2 12.4 12.6 12.8 13.0 13.2 13.4 13.6 13.8 13.9 14.1 14.3 14.5 14.7 14.9 15.1 15.3 15.5 15.7 15.9 16.1 16.3 16.5 16.7 16.9 17.1 17.3 17.5 17.7 17.9 18.1 18.3 18.5 18.7 18.9 19.1 19.3 19.4 19.6 19.8 20.0 20.2 20.4 20.6 20.8 21.0 21.2 21.4 21.6 21.8 22.0 22.2 22.4 22.6 22.8 23.0 23.2 23.4 23.6 23.8 24.0 24.2 24.4 24.6 24.8 25.0 25.1 25.3 25.5 25.7 25.9 26.1 26.3 26.5 26.7 26.9 27.1 27.3 27.5 27.7 27.9 28.1 28.3 28.5 28.7 28.9 29.1 29.3 29.5 29.7 29.9 30.1 30.3 30.5 30.6 30.8 31.0 31.2 31.4 31.6 31.8 32.0 32.2 32.4 32.6 32.8 33.0 33.2 33.4 33.6 33.8 34.0 34.2 34.4 34.6 34.8 35.0 35.2 35.4 35.6 35.8 36.0 36.1 36.3 36.5 36.7 36.9 37.1 37.3 37.5 37.7 37.9 38.1 38.3 38.5 38.7 38.9 39.1 39.3 39.5 39.7 39.9 40.1 40.3 40.5 40.7 40.9 41.1 41.3 41.5 41.7 41.8 42.0 42.2 42.4 42.6 42.8 43.0 43.2 43.4 43.6 43.8 44.0 44.2 44.4 44.6 44.8 45.0 45.2 45.4 45.6 45.8 46.0 46.2 46.4 46.6 46.8 47.0 47.2 47.3 47.5 47.7 47.9 48.1 48.3 48.5 48.7 48.9 49.1 49.3 49.5 49.7 49.9 50.1 50.3 50.5 50.7 50.9 51.1 51.3 51.5 51.7 51.9 52.1 52.3 52.5 52.7 52.8 53.0 53.2 53.4 53.6 53.8 54.0 54.2 54.4 54.6 54.8 55.0 55.2 55.4 55.6 55.8 56.0 56.2 56.4 56.6 56.8 57.0 57.2 57.4 57.6 57.8 58.0 58.2 58.3 58.5 58.7 58.9 59.1 59.3 59.5 59.7 59.9 60.1 60.3 60.5 60.7 60.9 61.1 61.3 61.5 61.7 61.9 62.1 62.3 62.5 62.7 62.9 63.1 63.3 63.5 63.7 63.9 64.0 64.2 64.4 64.6 64.8 65.0 65.2 65.4 65.6 65.8 66.0 66.2 66.4 66.6 66.8 67.0 67.2 67.4 67.6 67.8 68.0 68.2 68.4 68.6 68.8 69.0 69.2 69.4 69.5 69.7 69.9 70.1 70.3 70.5 70.7 70.9 71.1 71.3 71.5 71.7 71.9 72.1 72.3 72.5 72.7 72.9 73.1 73.3 73.5 73.7 73.9 74.1 74.3 74.5 74.7 74.9 75.0 75.2 75.4 75.6 75.8 76.0 76.2 76.4 76.6 76.8 77.0 77.2 77.4 77.6 77.8 78.0 78.2 78.4 78.6 78.8 79.0 79.2 79.4 79.6 79.8 80.0 80.2 80.4 80.6 80.7 80.9 81.1 81.3 81.5 81.7 81.9 82.1 82.3 82.5 82.7 82.9 83.1 83.3 83.5 83.7 83.9 84.1 84.3 84.5 84.7 84.9 85.1 85.3 85.5 85.7 85.9 86.1 86.2 86.4 86.6 86.8 87.0 87.2 87.4 87.6 87.8 88.0 88.2 88.4 88.6 88.8 89.0 89.2 89.4 89.6 89.8 90.0 90.2 90.4 90.6 90.8 91.0 91.2 91.4 91.6 91.7 91.9 92.1 92.3 92.5 92.7 92.9 93.1 93.3 93.5 93.7 93.9 94.1 94.3 94.5 94.7 94.9 95.1 95.3 95.5 95.7 95.9 96.1 96.3 96.5 96.7 96.9 97.1 97.2 97.4 97.6 97.8 98.0 98.2 98.4 98.6 98.8 99.0 99.2 99.4 99.6 99.8 -found 43 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 84156, rend_intergenic: 84153 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 40 predictions persist after filtering for low support -no exons in range 1 - 27649