-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_796

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 287, 381
Sorry, prediction snap_scaffold_796-snap.2-T1 fails validation.
(TCG)	 AG	287-381	GT	AGG
(GAA)	 AG	1145-1225	GT	AAG
(GAG)	 AG	4151-4345	GG	AGG
-recovered snap_scaffold_796-snap.2-T1, terminal, 4151, 4345
-recovered snap_scaffold_796-snap.2-T1, internal, 287, 381
-recovered snap_scaffold_796-snap.2-T1, internal, 1145, 1225

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2461, 2589
Sorry, prediction snap_scaffold_796-snap.1-T1 fails validation.
(GAC)	 AG	2461-2589	GT	AGG
(TCT)	 AG	2775-2864	GT	TGG
(ATG)	 AG	3103-3288	GT	ATG
(GAA)	 AG	4091-4234	CT	GAC
-recovered snap_scaffold_796-snap.1-T1, initial, 3103, 3288
-recovered snap_scaffold_796-snap.1-T1, terminal, 4091, 4234
-recovered snap_scaffold_796-snap.1-T1, internal, 2461, 2589
-recovered snap_scaffold_796-snap.1-T1, internal, 2775, 2864
-recovered snap_scaffold_796-snap.1-T1, internal, 3103, 3288
Valid prediction for Augustus_model.g40211.t1
Couldn't classify 2461, 2589
Sorry, prediction GlimmerHMM_glimmerT_60743-T1 fails validation.
(GAC)	 AG	2461-2589	GT	AGG
(TCT)	 AG	2775-2881	GT	TGG
(GAT)	 AG	3135-3288	GT	ATG
(GAA)	 AG	4091-4234	CT	GAC
-recovered GlimmerHMM_glimmerT_60743-T1, terminal, 4091, 4234
-recovered GlimmerHMM_glimmerT_60743-T1, internal, 2461, 2589
-recovered GlimmerHMM_glimmerT_60743-T1, internal, 2775, 2881
-recovered GlimmerHMM_glimmerT_60743-T1, internal, 3135, 3288
Couldn't classify 2500, 2589
Sorry, prediction pasa_asmbl_51678.p1 fails validation.
(TTG)	 TC	2500-2589	GT	AGG
(TCT)	 AG	2775-2881	GT	TGG
(GAT)	 AG	3135-3288	GT	ATG
(GAA)	 AG	4091-4234	CT	GAC
-recovered pasa_asmbl_51678.p1, terminal, 4091, 4234
-recovered pasa_asmbl_51678.p1, internal, 2775, 2881
-recovered pasa_asmbl_51678.p1, internal, 3135, 3288

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1960, rend_intergenic: 287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4420
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1960, rend_intergenic: 287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support