-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_795

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4236, 4397
Sorry, prediction snap_scaffold_795-snap.2-T1 fails validation.
(ATG)	 GG	1205-1425	GT	AGG
(GCT)	 AG	1976-2254	GT	AGG
(GTC)	 AG	2355-2580	GT	ATG
(TTG)	 AG	4236-4397	GT	GGG
-recovered snap_scaffold_795-snap.2-T1, initial, 1205, 1425
-recovered snap_scaffold_795-snap.2-T1, internal, 1976, 2254
-recovered snap_scaffold_795-snap.2-T1, internal, 2355, 2580
-recovered snap_scaffold_795-snap.2-T1, internal, 4236, 4397

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 53, 280
Couldn't classify 3666, 3755
Sorry, prediction snap_scaffold_795-snap.1-T1 fails validation.
(TAT)	 AG	53-280	GT	GGG
(GAC)	 AG	2341-2448	GT	CTG
(GGC)	 AG	3666-3755	GT	TGG
-recovered snap_scaffold_795-snap.1-T1, internal, 53, 280
-recovered snap_scaffold_795-snap.1-T1, internal, 2341, 2448
-recovered snap_scaffold_795-snap.1-T1, internal, 3666, 3755
Valid prediction for GlimmerHMM_glimmerT_60742-T1
Valid prediction for Augustus_model.g40210.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4369, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4421
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4369, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support