-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_791

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3432, 3629
Couldn't classify 4334, 4440
Sorry, prediction pasa_asmbl_51674.p2 fails validation.
(AAC)	 AG	3432-3629	GT	TGG
(CAC)	 AG	3853-3905	GT	AGG
(GTC)	 AG	4044-4141	GT	TGG
(CCA)	 AG	4334-4440		GT
add_exon() Sorry, pasa_asmbl_51674.p2 3853-3905-terminal-2 is invalid.
-recovered pasa_asmbl_51674.p2, terminal, 3853, 3905
-recovered pasa_asmbl_51674.p2, internal, 3432, 3629
-recovered pasa_asmbl_51674.p2, internal, 3853, 3905
-recovered pasa_asmbl_51674.p2, internal, 4044, 4141
Couldn't classify 3432, 3629
Couldn't classify 4334, 4389
Sorry, prediction snap_scaffold_791-snap.1-T1 fails validation.
(AAC)	 AG	3432-3629	GT	TGG
(CAC)	 AG	3853-3905	GT	AGG
(GTC)	 AG	4044-4141	GT	TGG
(CCA)	 AG	4334-4389	GT	GAG
add_exon() Sorry, snap_scaffold_791-snap.1-T1 3853-3905-terminal-2 is invalid.
-recovered snap_scaffold_791-snap.1-T1, terminal, 3853, 3905
-recovered snap_scaffold_791-snap.1-T1, internal, 3432, 3629
-recovered snap_scaffold_791-snap.1-T1, internal, 3853, 3905
-recovered snap_scaffold_791-snap.1-T1, internal, 4044, 4141
-recovered snap_scaffold_791-snap.1-T1, internal, 4334, 4389
Valid prediction for HiQ_model.g40209.t1
Couldn't classify 4044, 4141
Sorry, prediction GlimmerHMM_glimmerT_60740-T1 fails validation.
(ATG)	 AT	3462-3629	GT	TGG
(CAC)	 AG	3853-3905	GT	AGG
(GTC)	 AG	4044-4141	GT	TGG
-recovered GlimmerHMM_glimmerT_60740-T1, initial, 3462, 3629
add_exon() Sorry, GlimmerHMM_glimmerT_60740-T1 3853-3905-terminal-2 is invalid.
-recovered GlimmerHMM_glimmerT_60740-T1, terminal, 3853, 3905
-recovered GlimmerHMM_glimmerT_60740-T1, internal, 3853, 3905
-recovered GlimmerHMM_glimmerT_60740-T1, internal, 4044, 4141

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60739-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4440
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support