-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_790

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2272, 2388
Sorry, prediction snap_scaffold_790-snap.2-T1 fails validation.
(ATG)	 AG	1014-1122	GT	AGG
(GAT)	 AG	1760-1848	GT	AGG
(AAA)	 AG	2272-2388	GT	TCG
-recovered snap_scaffold_790-snap.2-T1, initial, 1014, 1122
-recovered snap_scaffold_790-snap.2-T1, internal, 1014, 1122
-recovered snap_scaffold_790-snap.2-T1, internal, 1760, 1848
-recovered snap_scaffold_790-snap.2-T1, internal, 2272, 2388

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40208.t1
Couldn't classify 2582, 2689
Sorry, prediction GlimmerHMM_glimmerT_60738-T1 fails validation.
(AGT)	 AG	2582-2689	GT	ACG
(CGC)	 AG	3603-3767	AT	AAA
-recovered GlimmerHMM_glimmerT_60738-T1, terminal, 3603, 3767
-recovered GlimmerHMM_glimmerT_60738-T1, internal, 2582, 2689
Valid prediction for snap_scaffold_790-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3915, rend_intergenic: 1014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4441
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3915, rend_intergenic: 1014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support