-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_79

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59718-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59718-T1 907-1247-terminal-1 is invalid.
Couldn't classify 20071, 20166
Sorry, prediction snap_scaffold_79-snap.3-T1 fails validation.
(ATG)	 CT	8092-8245	GT	AAG
(GTG)	 AG	8445-8570	GT	AGG
(TAT)	 AG	11669-11791	GT	GCG
(AAG)	 AG	20071-20166	GT	AGG
-recovered snap_scaffold_79-snap.3-T1, initial, 8092, 8245
-recovered snap_scaffold_79-snap.3-T1, terminal, 8445, 8570
-recovered snap_scaffold_79-snap.3-T1, internal, 8445, 8570
-recovered snap_scaffold_79-snap.3-T1, internal, 11669, 11791
-recovered snap_scaffold_79-snap.3-T1, internal, 20071, 20166

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59719-T1
Valid prediction for GlimmerHMM_glimmerT_59720-T1
Valid prediction for snap_scaffold_79-snap.2-T1
Valid prediction for snap_scaffold_79-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20152, rend_intergenic: 8092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 20460
-exon list size: 18


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 20152, rend_intergenic: 8092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support