-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_788

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4244, 4341
Sorry, prediction Augustus_model.g40207.t1 fails validation.
(ATG)	 TG	3692-3835	GT	ACG
(GTC)	 AG	4244-4341	GT	AGG
-recovered Augustus_model.g40207.t1, initial, 3692, 3835
-recovered Augustus_model.g40207.t1, internal, 4244, 4341

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40206.t1
Couldn't classify 2541, 2817
Couldn't classify 2980, 3038
Sorry, prediction pasa_asmbl_51673.p1 fails validation.
(TCC)	 CA	2541-2817	GT	AGG
(GGG)	 AG	2980-3038	AC	CCA
Valid prediction for snap_scaffold_788-snap.1-T1
Couldn't classify 2508, 2817
Sorry, prediction GlimmerHMM_glimmerT_60737-T1 fails validation.
(GTC)	 AG	2508-2817	GT	AGG
(GGG)	 AG	2980-3178	GT	AGG
(GTA)	 AG	3325-3700	GT	AAG
-recovered GlimmerHMM_glimmerT_60737-T1, terminal, 3325, 3700
-recovered GlimmerHMM_glimmerT_60737-T1, internal, 2508, 2817
-recovered GlimmerHMM_glimmerT_60737-T1, internal, 2980, 3178
-recovered GlimmerHMM_glimmerT_60737-T1, internal, 3325, 3700

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4453
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support