-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_784

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3871, 4078
Sorry, prediction GlimmerHMM_glimmerT_60733-T1 fails validation.
(ATG)	 GA	1608-1634	GT	AGG
(TTT)	 AG	3073-3210	GT	TGG
(ATC)	 AG	3871-4078	GT	TGG
-recovered GlimmerHMM_glimmerT_60733-T1, initial, 1608, 1634
-recovered GlimmerHMM_glimmerT_60733-T1, internal, 3073, 3210
-recovered GlimmerHMM_glimmerT_60733-T1, internal, 3871, 4078
Valid prediction for Augustus_model.g40204.t1
Couldn't classify 1483, 1634
Couldn't classify 3871, 4069
Sorry, prediction snap_scaffold_784-snap.1-T1 fails validation.
(ATT)	 AG	1483-1634	GT	AGG
(TTT)	 AG	3073-3210	GT	TGG
(ATC)	 AG	3871-4069	GT	GGG
-recovered snap_scaffold_784-snap.1-T1, internal, 1483, 1634
-recovered snap_scaffold_784-snap.1-T1, internal, 3073, 3210
-recovered snap_scaffold_784-snap.1-T1, internal, 3871, 4069

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 443, 601
Couldn't classify 1262, 1429
Sorry, prediction snap_scaffold_784-snap.2-T1 fails validation.
(GGT)	 AG	443-601	GT	AGG
(GCT)	 AG	1262-1429	GT	GGG
-recovered snap_scaffold_784-snap.2-T1, internal, 443, 601
-recovered snap_scaffold_784-snap.2-T1, internal, 1262, 1429

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4069, rend_intergenic: 3049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4477
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4069, rend_intergenic: 3049  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support