-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_781

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 121, 223
Sorry, prediction GlimmerHMM_glimmerT_60730-T1 fails validation.
(ACG)	 AG	121-223	GT	GGG
(GGT)	 AG	1048-1234	GT	AGG
(GCT)	 AG	4029-4262	AG	AGA
-recovered GlimmerHMM_glimmerT_60730-T1, terminal, 4029, 4262
-recovered GlimmerHMM_glimmerT_60730-T1, internal, 121, 223
-recovered GlimmerHMM_glimmerT_60730-T1, internal, 1048, 1234
Couldn't classify 121, 223
Couldn't classify 1048, 1234
Sorry, prediction snap_scaffold_781-snap.1-T1 fails validation.
(ACG)	 AG	121-223	GT	GGG
(GGT)	 AG	1048-1234	GT	AGG
-recovered snap_scaffold_781-snap.1-T1, internal, 121, 223
-recovered snap_scaffold_781-snap.1-T1, internal, 1048, 1234
Couldn't classify 121, 223
Sorry, prediction Augustus_model.g40202.t1 fails validation.
(ACG)	 AG	121-223	GT	GGG
(GGT)	 AG	1048-1234	GT	AGG
(CAA)	 AG	2920-2946	AT	AAA
-recovered Augustus_model.g40202.t1, terminal, 2920, 2946
-recovered Augustus_model.g40202.t1, internal, 121, 223
-recovered Augustus_model.g40202.t1, internal, 1048, 1234

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4488
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support