-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_780

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_780-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 685, 883
Sorry, prediction Augustus_model.g40201.t1 fails validation.
(GAA)	 AG	685-883	GT	GCG
(AAC)	 AG	1226-1835	AG	AAA
-recovered Augustus_model.g40201.t1, terminal, 1226, 1835
-recovered Augustus_model.g40201.t1, internal, 685, 883
Valid prediction for snap_scaffold_780-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_60728-T1
Couldn't classify 685, 883
Sorry, prediction GlimmerHMM_glimmerT_60729-T1 fails validation.
(GAA)	 AG	685-883	GT	GCG
(GGG)	 AG	1106-1835	AG	AAA
-recovered GlimmerHMM_glimmerT_60729-T1, terminal, 1106, 1835
-recovered GlimmerHMM_glimmerT_60729-T1, internal, 685, 883
Valid prediction for GlimmerHMM_glimmerT_60727-T1
Valid prediction for Augustus_model.g40200.t1
Valid prediction for snap_scaffold_780-snap.1-T1
Valid prediction for Augustus_model.g40199.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4493
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support