-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_779

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 227
Sorry, prediction Augustus_model.g40198.t1 fails validation.
(GTA)	 AG	40-227	GT	CCG
(GTG)	 AG	477-565	GT	AGG
(TGG)	 AG	2032-2240	GT	ACG
(GAT)	 AG	4077-4444	CA	GAC
-recovered Augustus_model.g40198.t1, terminal, 4077, 4444
-recovered Augustus_model.g40198.t1, internal, 40, 227
-recovered Augustus_model.g40198.t1, internal, 477, 565
-recovered Augustus_model.g40198.t1, internal, 2032, 2240
Valid prediction for GlimmerHMM_glimmerT_60726-T1
Couldn't classify 2174, 2240
Sorry, prediction pasa_asmbl_51657.p1 fails validation.
(CCC)	 GC	2174-2240	GT	ACG
(GAT)	 AG	4077-4444	CA	GAC
-recovered pasa_asmbl_51657.p1, terminal, 4077, 4444
Couldn't classify 33, 242
Couldn't classify 4077, 4438
Sorry, prediction snap_scaffold_779-snap.1-T1 fails validation.
(ATC)	 AG	33-242	GT	GAG
(GTG)	 AG	477-565	GT	AGG
(TGG)	 AG	2032-2240	GT	ACG
(GAT)	 AG	4077-4438	GT	TGG
-recovered snap_scaffold_779-snap.1-T1, internal, 33, 242
-recovered snap_scaffold_779-snap.1-T1, internal, 477, 565
-recovered snap_scaffold_779-snap.1-T1, internal, 2032, 2240
-recovered snap_scaffold_779-snap.1-T1, internal, 4077, 4438

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4356, 4439
Sorry, prediction snap_scaffold_779-snap.2-T1 fails validation.
(ATG)	 CC	65-369	GT	TGG
(CAT)	 AG	2287-2455	GT	TAG
(GGG)	 AG	4356-4439	GT	AGG
-recovered snap_scaffold_779-snap.2-T1, initial, 65, 369
-recovered snap_scaffold_779-snap.2-T1, internal, 2287, 2455
-recovered snap_scaffold_779-snap.2-T1, internal, 4356, 4439

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4438, rend_intergenic: 63  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4501
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4438, rend_intergenic: 63  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support