-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_776

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 222, 461
Couldn't classify 4370, 4493
Sorry, prediction snap_scaffold_776-snap.1-T1 fails validation.
(GAG)	 AG	222-461	GT	AGG
(CCA)	 AG	763-909	GT	AGG
(AAT)	 AG	1140-1282	GT	AGG
(CGG)	 AG	4370-4493	GT	TGG
-recovered snap_scaffold_776-snap.1-T1, internal, 222, 461
-recovered snap_scaffold_776-snap.1-T1, internal, 763, 909
-recovered snap_scaffold_776-snap.1-T1, internal, 1140, 1282
-recovered snap_scaffold_776-snap.1-T1, internal, 4370, 4493
Valid prediction for Augustus_model.g40196.t1
Couldn't classify 1140, 1282
Sorry, prediction GlimmerHMM_glimmerT_60723-T1 fails validation.
(ATG)	 CC	769-909	GT	AGG
(AAT)	 AG	1140-1282	GT	AGG
-recovered GlimmerHMM_glimmerT_60723-T1, initial, 769, 909
-recovered GlimmerHMM_glimmerT_60723-T1, internal, 1140, 1282
Valid prediction for GlimmerHMM_glimmerT_60722-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4519
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support