-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_773

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 562, 709
Sorry, prediction Augustus_model.g40193.t1 fails validation.
(ATC)	 AG	562-709	GT	TAG
(CTG)	 AG	1099-1230	GT	AGG
(GTT)	 AG	1579-1691	GT	AGG
(ATT)	 AG	1864-2013	GT	AGG
(AGA)	 AG	2209-2349	GT	ATG
(GTG)	 AG	2484-2597	GT	CTG
(GAG)	 AG	2699-2771	GT	AGG
(GCT)	 AG	2859-2997	GT	AAG
(ACC)	 AG	3450-3553	GT	AAG
(GTT)	 AG	3770-3802	GT	AGG
(CGA)	 AG	4305-4444	TA	GAT
-recovered Augustus_model.g40193.t1, terminal, 4305, 4444
-recovered Augustus_model.g40193.t1, internal, 562, 709
-recovered Augustus_model.g40193.t1, internal, 1099, 1230
-recovered Augustus_model.g40193.t1, internal, 1579, 1691
-recovered Augustus_model.g40193.t1, internal, 1864, 2013
-recovered Augustus_model.g40193.t1, internal, 2209, 2349
-recovered Augustus_model.g40193.t1, internal, 2484, 2597
-recovered Augustus_model.g40193.t1, internal, 2699, 2771
-recovered Augustus_model.g40193.t1, internal, 2859, 2997
-recovered Augustus_model.g40193.t1, internal, 3450, 3553
-recovered Augustus_model.g40193.t1, internal, 3770, 3802
Valid prediction for GlimmerHMM_glimmerT_60719-T1
Valid prediction for snap_scaffold_773-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4540
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support