-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_772

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60718-T1
Couldn't classify 478, 569
Sorry, prediction snap_scaffold_772-snap.1-T1 fails validation.
(GCT)	 AG	478-569	GT	ACG
(GAA)	 AG	951-1503	AG	GAA
-recovered snap_scaffold_772-snap.1-T1, terminal, 951, 1503
-recovered snap_scaffold_772-snap.1-T1, internal, 478, 569

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2278, 2397
Sorry, prediction snap_scaffold_772-snap.2-T1 fails validation.
(ATG)	 GG	1983-2096	GT	TAG
(GAG)	 AG	2278-2397	GT	AGG
-recovered snap_scaffold_772-snap.2-T1, initial, 1983, 2096
-recovered snap_scaffold_772-snap.2-T1, internal, 2278, 2397
Couldn't classify 1158, 1452
Sorry, prediction snap_scaffold_772-snap.3-T1 fails validation.
(GTC)	 AG	1158-1452	GT	GAG
(AAC)	 AG	1715-1964	CA	GAC
-recovered snap_scaffold_772-snap.3-T1, terminal, 1715, 1964
-recovered snap_scaffold_772-snap.3-T1, internal, 1158, 1452

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4548
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support