-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_77

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59709-T1
Valid prediction for snap_scaffold_77-snap.2-T1
Valid prediction for Augustus_model.g39564.t1
Valid prediction for snap_scaffold_77-snap.5-T1
Valid prediction for Augustus_model.g39566.t1
Valid prediction for Augustus_model.g39565.t1
Valid prediction for Augustus_model.g39563.t1
Couldn't classify 20468, 20697
Sorry, prediction GlimmerHMM_glimmerT_59710-T1 fails validation.
(ATG)	 AG	20196-20345	GT	CTG
(AAT)	 AG	20468-20697	GT	AGG
-recovered GlimmerHMM_glimmerT_59710-T1, initial, 20196, 20345
-recovered GlimmerHMM_glimmerT_59710-T1, internal, 20196, 20345
-recovered GlimmerHMM_glimmerT_59710-T1, internal, 20468, 20697
Valid prediction for snap_scaffold_77-snap.3-T1
Valid prediction for snap_scaffold_77-snap.1-T1
Couldn't classify 20551, 20697
Sorry, prediction snap_scaffold_77-snap.7-T1 fails validation.
(ATG)	 AC	20217-20319	GT	AGG
(GCT)	 AG	20551-20697	GT	AGG
-recovered snap_scaffold_77-snap.7-T1, initial, 20217, 20319
-recovered snap_scaffold_77-snap.7-T1, internal, 20551, 20697
Valid prediction for GlimmerHMM_glimmerT_59708-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_77-snap.6-T1
Valid prediction for snap_scaffold_77-snap.4-T1
Valid prediction for Augustus_model.g39567.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20174, rend_intergenic: 18087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 21180
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 7 predictions from path traversal
Error with prediction: snap lend_intergenic: 20174, rend_intergenic: 18087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support