-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_766

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 295
Sorry, prediction GlimmerHMM_glimmerT_60711-T1 fails validation.
(CCT)	 GA	1-295	CT	GAC
Couldn't classify 30, 280
Sorry, prediction snap_scaffold_766-snap.1-T1 fails validation.
(TGA)	 AG	30-280	GT	CAG
(TGA)	 AG	342-550	GT	CAG
(GCT)	 AG	610-720	GT	GGG
(AAC)	 AG	1789-1994	GT	GGG
(CTA)	 AG	2014-2179	TT	AGT
-recovered snap_scaffold_766-snap.1-T1, terminal, 2014, 2179
-recovered snap_scaffold_766-snap.1-T1, internal, 30, 280
-recovered snap_scaffold_766-snap.1-T1, internal, 342, 550
-recovered snap_scaffold_766-snap.1-T1, internal, 610, 720
-recovered snap_scaffold_766-snap.1-T1, internal, 1789, 1994
Couldn't classify 4151, 4350
Sorry, prediction snap_scaffold_766-snap.3-T1 fails validation.
(ATG)	 CT	2190-2275	GT	GGG
(GTG)	 AG	4151-4350	GT	TGG
-recovered snap_scaffold_766-snap.3-T1, initial, 2190, 2275
-recovered snap_scaffold_766-snap.3-T1, internal, 4151, 4350
Couldn't classify 4151, 4350
Sorry, prediction GlimmerHMM_glimmerT_60712-T1 fails validation.
(ATG)	 TC	586-720	GT	GGG
(AAC)	 AG	1789-1994	GT	GGG
(GTG)	 AG	4151-4350	GT	TGG
-recovered GlimmerHMM_glimmerT_60712-T1, initial, 586, 720
-recovered GlimmerHMM_glimmerT_60712-T1, internal, 1789, 1994
-recovered GlimmerHMM_glimmerT_60712-T1, internal, 4151, 4350
Couldn't classify 610, 720
Couldn't classify 4568, 4603
Sorry, prediction Augustus_model.g40191.t1 fails validation.
(GCT)	 AG	610-720	GT	GGG
(AAC)	 AG	1789-1994	GT	GGG
(GTG)	 AG	4151-4350	GT	TGG
(GTC)	 AG	4568-4603		GA
-recovered Augustus_model.g40191.t1, internal, 610, 720
-recovered Augustus_model.g40191.t1, internal, 1789, 1994
-recovered Augustus_model.g40191.t1, internal, 4151, 4350

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_766-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2179, rend_intergenic: 1833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3341, rend_intergenic: 2190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4603
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2179, rend_intergenic: 1833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3341, rend_intergenic: 2190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support