-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_761

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40188.t1
Valid prediction for GlimmerHMM_glimmerT_60708-T1
Couldn't classify 162, 284
Couldn't classify 4040, 4200
Sorry, prediction snap_scaffold_761-snap.1-T1 fails validation.
(TGC)	 AG	162-284	GT	CAG
(CGA)	 AG	1750-2056	GT	CGG
(GTG)	 AG	3251-3404	GT	AGG
(GCC)	 AG	3679-3875	GT	AGG
(AGG)	 AG	4040-4200	GT	AGG
-recovered snap_scaffold_761-snap.1-T1, internal, 162, 284
-recovered snap_scaffold_761-snap.1-T1, internal, 1750, 2056
-recovered snap_scaffold_761-snap.1-T1, internal, 3251, 3404
-recovered snap_scaffold_761-snap.1-T1, internal, 3679, 3875
-recovered snap_scaffold_761-snap.1-T1, internal, 4040, 4200
Valid prediction for GlimmerHMM_glimmerT_60709-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40187.t1
Couldn't classify 369, 484
Couldn't classify 2748, 2887
Sorry, prediction snap_scaffold_761-snap.2-T1 fails validation.
(GGG)	 AG	369-484	GT	TTG
(CAG)	 AG	859-949	GT	GGG
(GGC)	 AG	1306-1493	GT	CGG
(AAG)	 AG	2241-2320	GT	AGG
(GAG)	 AG	2598-2732	GT	GGG
(ATC)	 AG	2748-2887	GT	ACG
-recovered snap_scaffold_761-snap.2-T1, internal, 369, 484
-recovered snap_scaffold_761-snap.2-T1, internal, 859, 949
-recovered snap_scaffold_761-snap.2-T1, internal, 1306, 1493
-recovered snap_scaffold_761-snap.2-T1, internal, 2241, 2320
-recovered snap_scaffold_761-snap.2-T1, internal, 2598, 2732
-recovered snap_scaffold_761-snap.2-T1, internal, 2748, 2887

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4200, rend_intergenic: 1730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4616
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4200, rend_intergenic: 1730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support