-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_757

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g40185.t1
Valid prediction for GlimmerHMM_glimmerT_60703-T1
Couldn't classify 3107, 3203
Couldn't classify 4352, 4503
Sorry, prediction snap_scaffold_757-snap.2-T1 fails validation.
(CAG)	 AG	3107-3203	GT	AGG
(GAG)	 AG	3531-3667	GT	GGG
(GAC)	 AG	3983-4078	GT	GGG
(GGA)	 AG	4352-4503	GT	GAG
-recovered snap_scaffold_757-snap.2-T1, internal, 3107, 3203
-recovered snap_scaffold_757-snap.2-T1, internal, 3531, 3667
-recovered snap_scaffold_757-snap.2-T1, internal, 3983, 4078
-recovered snap_scaffold_757-snap.2-T1, internal, 4352, 4503
Couldn't classify 4352, 4462
Sorry, prediction pasa_asmbl_51652.p1 fails validation.
(ATG)	 AC	3134-3203	GT	AGG
(GAG)	 AG	3531-3667	GT	GGG
(GAC)	 AG	3983-4078	GT	GGG
(GGA)	 AG	4352-4462	GA	ACG
-recovered pasa_asmbl_51652.p1, initial, 3134, 3203
-recovered pasa_asmbl_51652.p1, internal, 3531, 3667
-recovered pasa_asmbl_51652.p1, internal, 3983, 4078

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1335, 1385
Sorry, prediction snap_scaffold_757-snap.1-T1 fails validation.
(GTG)	 AG	1335-1385	GT	AGG
(GAA)	 AG	3686-3727	GT	TGG
(GAG)	 AG	3883-4093	GT	GGG
(TGC)	 AG	4275-4312	TT	AGT
-recovered snap_scaffold_757-snap.1-T1, terminal, 4275, 4312
-recovered snap_scaffold_757-snap.1-T1, internal, 1335, 1385
-recovered snap_scaffold_757-snap.1-T1, internal, 3686, 3727
-recovered snap_scaffold_757-snap.1-T1, internal, 3883, 4093
Couldn't classify 3883, 4044
Sorry, prediction Augustus_model.g40184.t1 fails validation.
(ATG)	 TT	1559-1594	GT	CCG
(GAA)	 AG	3686-3727	GT	TGG
(GAG)	 AG	3883-4044	GT	AGG
-recovered Augustus_model.g40184.t1, initial, 1559, 1594
-recovered Augustus_model.g40184.t1, internal, 3686, 3727
-recovered Augustus_model.g40184.t1, internal, 3883, 4044
Valid prediction for GlimmerHMM_glimmerT_60702-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3306, rend_intergenic: 3107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4640
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3306, rend_intergenic: 3107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support