-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_756

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60701-T1
Valid prediction for GlimmerHMM_glimmerT_60700-T1
Couldn't classify 925, 1073
Sorry, prediction snap_scaffold_756-snap.1-T1 fails validation.
(TAC)	 AG	925-1073	GT	AGG
(GTT)	 AG	1770-1934	GT	CGG
(GTA)	 AG	2075-2656	GT	AAG
(GTA)	 AG	3353-3590	GT	ATG
(GTG)	 AG	4038-4208	AC	AAA
-recovered snap_scaffold_756-snap.1-T1, terminal, 4038, 4208
-recovered snap_scaffold_756-snap.1-T1, internal, 925, 1073
-recovered snap_scaffold_756-snap.1-T1, internal, 1770, 1934
-recovered snap_scaffold_756-snap.1-T1, internal, 2075, 2656
-recovered snap_scaffold_756-snap.1-T1, internal, 3353, 3590
Couldn't classify 925, 1073
Sorry, prediction Augustus_model.g40183.t1 fails validation.
(TAC)	 AG	925-1073	GT	AGG
(GTT)	 AG	1770-1934	GT	CGG
(GTA)	 AG	2075-2656	GT	AAG
(GTA)	 AG	3353-3590	GT	ATG
(GTG)	 AG	4038-4208	AC	AAA
-recovered Augustus_model.g40183.t1, terminal, 4038, 4208
-recovered Augustus_model.g40183.t1, internal, 925, 1073
-recovered Augustus_model.g40183.t1, internal, 1770, 1934
-recovered Augustus_model.g40183.t1, internal, 2075, 2656
-recovered Augustus_model.g40183.t1, internal, 3353, 3590

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4646
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support