-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_752

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 116, 230
Couldn't classify 2118, 2198
Sorry, prediction snap_scaffold_752-snap.1-T1 fails validation.
(CTA)	 AG	116-230	GT	AGG
(GAG)	 AG	822-914	GT	AGG
(CTT)	 AG	2118-2198	GT	ACG
add_exon() Sorry, snap_scaffold_752-snap.1-T1 116-230-terminal-3 is invalid.
-recovered snap_scaffold_752-snap.1-T1, terminal, 116, 230
-recovered snap_scaffold_752-snap.1-T1, internal, 116, 230
-recovered snap_scaffold_752-snap.1-T1, internal, 822, 914
-recovered snap_scaffold_752-snap.1-T1, internal, 2118, 2198

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 244, 418
Couldn't classify 2518, 2646
Sorry, prediction snap_scaffold_752-snap.2-T1 fails validation.
(CGA)	 AG	244-418	GT	GCG
(AAA)	 AG	1650-1799	GT	CTG
(TCC)	 AG	2406-2512	GT	ACG
(TCC)	 AG	2518-2646	GT	GGG
-recovered snap_scaffold_752-snap.2-T1, internal, 244, 418
-recovered snap_scaffold_752-snap.2-T1, internal, 1650, 1799
-recovered snap_scaffold_752-snap.2-T1, internal, 2406, 2512
-recovered snap_scaffold_752-snap.2-T1, internal, 2518, 2646
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2198, rend_intergenic: 2026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4671
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2198, rend_intergenic: 2026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support