-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_750

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 138, 255
Couldn't classify 2033, 2737
Sorry, prediction snap_scaffold_750-snap.1-T1 fails validation.
(GAT)	 AG	138-255	GT	AGG
(TGT)	 AG	403-536	GT	GGG
(GCT)	 AG	1018-1167	GT	GGG
(AGA)	 AG	1173-1463	GT	GAG
(GAG)	 AG	2033-2737	GT	TTG
-recovered snap_scaffold_750-snap.1-T1, internal, 138, 255
-recovered snap_scaffold_750-snap.1-T1, internal, 403, 536
-recovered snap_scaffold_750-snap.1-T1, internal, 1018, 1167
-recovered snap_scaffold_750-snap.1-T1, internal, 1173, 1463
-recovered snap_scaffold_750-snap.1-T1, internal, 2033, 2737
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 959, 1080
Sorry, prediction GlimmerHMM_glimmerT_60695-T1 fails validation.
(AGT)	 AG	959-1080	GT	AGG
(CCC)	 AG	3143-3190	GA	GAG
-recovered GlimmerHMM_glimmerT_60695-T1, terminal, 3143, 3190
-recovered GlimmerHMM_glimmerT_60695-T1, internal, 959, 1080
Valid prediction for Augustus_model.g40179.t1
Couldn't classify 959, 1080
Couldn't classify 3560, 3813
Sorry, prediction snap_scaffold_750-snap.2-T1 fails validation.
(AGT)	 AG	959-1080	GT	AGG
(GGA)	 AG	3560-3813	GT	AGG
-recovered snap_scaffold_750-snap.2-T1, internal, 959, 1080
-recovered snap_scaffold_750-snap.2-T1, internal, 3560, 3813

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2737, rend_intergenic: 864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4676
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2737, rend_intergenic: 864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support