-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_749

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2364, 2397
Couldn't classify 4072, 4278
Sorry, prediction snap_scaffold_749-snap.2-T1 fails validation.
(CTC)	 AG	2364-2397	GT	AGG
(GTA)	 AG	2537-2641	GT	TGG
(AGT)	 AG	3456-3623	GT	GGG
(GCG)	 AG	3747-3827	GT	TAG
(CCT)	 AG	3852-3896	GT	CGG
(GGG)	 AG	3931-4041	GT	TGG
(TCA)	 AG	4072-4278	GT	TGG
-recovered snap_scaffold_749-snap.2-T1, internal, 2364, 2397
-recovered snap_scaffold_749-snap.2-T1, internal, 2537, 2641
-recovered snap_scaffold_749-snap.2-T1, internal, 3456, 3623
-recovered snap_scaffold_749-snap.2-T1, internal, 3747, 3827
-recovered snap_scaffold_749-snap.2-T1, internal, 3852, 3896
-recovered snap_scaffold_749-snap.2-T1, internal, 3931, 4041
-recovered snap_scaffold_749-snap.2-T1, internal, 4072, 4278

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60694-T1
Couldn't classify 13, 165
Couldn't classify 1066, 1209
Sorry, prediction pasa_asmbl_51648.p1 fails validation.
(AAG)	 AC	13-165	GT	AGG
(GAG)	 AG	352-924	GT	GGG
(ATC)	 AG	1066-1209	CT	TGC
-recovered pasa_asmbl_51648.p1, internal, 352, 924
Couldn't classify 3983, 4100
Sorry, prediction snap_scaffold_749-snap.1-T1 fails validation.
(ATG)	 GG	70-165	GT	AGG
(GAG)	 AG	352-924	GT	GGG
(ATC)	 AG	1066-1174	GT	CGG
(GCC)	 AG	2004-2122	GT	AGG
(GAC)	 AG	2236-2367	GT	TGG
(GTG)	 AG	3076-3189	GT	TCG
(GAC)	 AG	3570-3654	GT	AGG
(GAA)	 AG	3983-4100	GT	TGG
-recovered snap_scaffold_749-snap.1-T1, initial, 70, 165
-recovered snap_scaffold_749-snap.1-T1, internal, 352, 924
-recovered snap_scaffold_749-snap.1-T1, internal, 1066, 1174
-recovered snap_scaffold_749-snap.1-T1, internal, 2004, 2122
-recovered snap_scaffold_749-snap.1-T1, internal, 2236, 2367
-recovered snap_scaffold_749-snap.1-T1, internal, 3076, 3189
-recovered snap_scaffold_749-snap.1-T1, internal, 3570, 3654
-recovered snap_scaffold_749-snap.1-T1, internal, 3983, 4100
Couldn't classify 3983, 4100
Sorry, prediction Augustus_model.g40178.t1 fails validation.
(ATG)	 GG	70-165	GT	AGG
(GAG)	 AG	352-924	GT	GGG
(ATC)	 AG	1066-1174	GT	CGG
(GCC)	 AG	2004-2122	GT	AGG
(GAC)	 AG	2236-2367	GT	TGG
(GTG)	 AG	3076-3189	GT	TCG
(GAC)	 AG	3570-3654	GT	AGG
(GAA)	 AG	3983-4100	GT	TGG
-recovered Augustus_model.g40178.t1, initial, 70, 165
-recovered Augustus_model.g40178.t1, internal, 352, 924
-recovered Augustus_model.g40178.t1, internal, 1066, 1174
-recovered Augustus_model.g40178.t1, internal, 2004, 2122
-recovered Augustus_model.g40178.t1, internal, 2236, 2367
-recovered Augustus_model.g40178.t1, internal, 3076, 3189
-recovered Augustus_model.g40178.t1, internal, 3570, 3654
-recovered Augustus_model.g40178.t1, internal, 3983, 4100
Valid prediction for GlimmerHMM_glimmerT_60693-T1
Couldn't classify 3076, 3189
Couldn't classify 3983, 4101
Sorry, prediction pasa_asmbl_51647.p1 fails validation.
(GTG)	 AG	3076-3189	GT	TCG
(GAC)	 AG	3570-3654	GT	AGG
(GAA)	 AG	3983-4101	TA	GGT
-recovered pasa_asmbl_51647.p1, internal, 3076, 3189
-recovered pasa_asmbl_51647.p1, internal, 3570, 3654

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4613, rend_intergenic: 2364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4682
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4613, rend_intergenic: 2364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support