-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_748

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4550, 4634
Sorry, prediction snap_scaffold_748-snap.1-T1 fails validation.
(ATG)	 AC	343-518	GT	CGG
(GGA)	 AG	764-856	GT	GGG
(GTA)	 AG	2799-2916	GT	AGG
(CTG)	 AG	4274-4449	GT	AGG
(GAA)	 AG	4550-4634	GT	GGG
-recovered snap_scaffold_748-snap.1-T1, initial, 343, 518
-recovered snap_scaffold_748-snap.1-T1, internal, 764, 856
-recovered snap_scaffold_748-snap.1-T1, internal, 2799, 2916
-recovered snap_scaffold_748-snap.1-T1, internal, 4274, 4449
-recovered snap_scaffold_748-snap.1-T1, internal, 4550, 4634
Couldn't classify 4550, 4634
Sorry, prediction Augustus_model.g40177.t1 fails validation.
(ATG)	 CC	1533-1549	GT	CTG
(GTA)	 AG	2799-2916	GT	AGG
(CTG)	 AG	4274-4449	GT	AGG
(GAA)	 AG	4550-4634	GT	GGG
-recovered Augustus_model.g40177.t1, initial, 1533, 1549
-recovered Augustus_model.g40177.t1, internal, 2799, 2916
-recovered Augustus_model.g40177.t1, internal, 4274, 4449
-recovered Augustus_model.g40177.t1, internal, 4550, 4634
Couldn't classify 2799, 2926
Sorry, prediction GlimmerHMM_glimmerT_60692-T1 fails validation.
(GTA)	 AG	2799-2926	GT	AGG
(CTG)	 AG	4274-4314	GC	AAG
-recovered GlimmerHMM_glimmerT_60692-T1, terminal, 4274, 4314
-recovered GlimmerHMM_glimmerT_60692-T1, internal, 2799, 2926
-recovered GlimmerHMM_glimmerT_60692-T1, internal, 4274, 4314

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4686
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support