-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_747

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1846, 1922
Couldn't classify 2813, 2956
Sorry, prediction snap_scaffold_747-snap.2-T1 fails validation.
(GGG)	 AG	1846-1922	GT	TGG
(CGT)	 AG	1938-2117	GT	CTG
(GCT)	 AG	2813-2956	GT	AGG
-recovered snap_scaffold_747-snap.2-T1, internal, 1846, 1922
-recovered snap_scaffold_747-snap.2-T1, internal, 1938, 2117
-recovered snap_scaffold_747-snap.2-T1, internal, 2813, 2956

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1732, 1893
Couldn't classify 3587, 3683
Sorry, prediction snap_scaffold_747-snap.1-T1 fails validation.
(ACC)	 AG	1732-1893	GT	GAG
(GCC)	 AG	2575-2883	GT	GGG
(TCC)	 AG	3587-3683	GT	GGG
add_exon() Sorry, snap_scaffold_747-snap.1-T1 1732-1893-terminal-1 is invalid.
-recovered snap_scaffold_747-snap.1-T1, terminal, 1732, 1893
-recovered snap_scaffold_747-snap.1-T1, internal, 1732, 1893
-recovered snap_scaffold_747-snap.1-T1, internal, 2575, 2883
-recovered snap_scaffold_747-snap.1-T1, internal, 3587, 3683
Couldn't classify 4643, 4689
Sorry, prediction Augustus_model.g40176.t1 fails validation.
(ATG)	 CG	1005-1019	GT	AGG
(CTC)	 AG	1222-1234	GT	GGG
(ACC)	 AG	1732-1889	GT	GAG
(TGT)	 AG	2446-2452	GT	CTG
(GAG)	 AG	2617-2883	GT	GGG
(TCC)	 AG	3587-3683	GT	GGG
(GGT)	 AG	4643-4689		TA
-recovered Augustus_model.g40176.t1, initial, 1005, 1019
-recovered Augustus_model.g40176.t1, internal, 1222, 1234
-recovered Augustus_model.g40176.t1, internal, 1732, 1889
-recovered Augustus_model.g40176.t1, internal, 2446, 2452
-recovered Augustus_model.g40176.t1, internal, 2617, 2883
-recovered Augustus_model.g40176.t1, internal, 3587, 3683
Couldn't classify 1732, 1889
Sorry, prediction GlimmerHMM_glimmerT_60691-T1 fails validation.
(ACC)	 AG	1732-1889	GT	GAG
(GCC)	 AG	2575-2766	CC	GAC
-recovered GlimmerHMM_glimmerT_60691-T1, terminal, 2575, 2766
-recovered GlimmerHMM_glimmerT_60691-T1, internal, 1732, 1889

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2958, rend_intergenic: 1846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4689
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2958, rend_intergenic: 1846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support