-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_746

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60690-T1
Couldn't classify 4477, 4624
Sorry, prediction snap_scaffold_746-snap.3-T1 fails validation.
(ATG)	 GC	2376-2773	GT	CTG
(AGG)	 AG	3245-3542	GT	TGG
(GAA)	 AG	3707-3749	GT	TGG
(TGG)	 AG	4202-4311	GT	AGG
(TTC)	 AG	4477-4624	GT	CGG
-recovered snap_scaffold_746-snap.3-T1, initial, 2376, 2773
-recovered snap_scaffold_746-snap.3-T1, internal, 3245, 3542
-recovered snap_scaffold_746-snap.3-T1, internal, 3707, 3749
-recovered snap_scaffold_746-snap.3-T1, internal, 4202, 4311
-recovered snap_scaffold_746-snap.3-T1, internal, 4477, 4624
Couldn't classify 119, 234
Sorry, prediction snap_scaffold_746-snap.1-T1 fails validation.
(TAC)	 AG	119-234	GT	AGG
(GAG)	 AG	1819-2068	GC	AAG
-recovered snap_scaffold_746-snap.1-T1, terminal, 1819, 2068
-recovered snap_scaffold_746-snap.1-T1, internal, 119, 234
-recovered snap_scaffold_746-snap.1-T1, internal, 1819, 2068
Valid prediction for GlimmerHMM_glimmerT_60688-T1
Couldn't classify 160, 229
Couldn't classify 4477, 4624
Sorry, prediction Augustus_model.g40175.t1 fails validation.
(CTG)	 AG	160-229	GT	AGG
(GAG)	 AG	1819-1999	GT	AGG
(CTG)	 AG	2311-2773	GT	CTG
(TCA)	 AG	3239-3370	GT	GGG
(TGC)	 AG	3511-3578	GT	TGG
(GTG)	 AG	3678-3749	GT	TGG
(TGG)	 AG	4202-4311	GT	AGG
(TTC)	 AG	4477-4624	GT	CGG
-recovered Augustus_model.g40175.t1, internal, 160, 229
-recovered Augustus_model.g40175.t1, internal, 1819, 1999
-recovered Augustus_model.g40175.t1, internal, 2311, 2773
-recovered Augustus_model.g40175.t1, internal, 3239, 3370
-recovered Augustus_model.g40175.t1, internal, 3511, 3578
-recovered Augustus_model.g40175.t1, internal, 3678, 3749
-recovered Augustus_model.g40175.t1, internal, 4202, 4311
-recovered Augustus_model.g40175.t1, internal, 4477, 4624

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60689-T1
Couldn't classify 4473, 4566
Sorry, prediction snap_scaffold_746-snap.2-T1 fails validation.
(ATG)	 AC	2798-2914	GT	CCG
(GTA)	 AG	4473-4566	GT	AGG
-recovered snap_scaffold_746-snap.2-T1, initial, 2798, 2914
-recovered snap_scaffold_746-snap.2-T1, internal, 4473, 4566

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2068, rend_intergenic: 124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4689
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2068, rend_intergenic: 124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support