-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_745

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 919, 985
Couldn't classify 4451, 4589
Sorry, prediction snap_scaffold_745-snap.2-T1 fails validation.
(GCT)	 AG	919-985	GT	AGG
(GAC)	 AG	4451-4589	GT	ATG
-recovered snap_scaffold_745-snap.2-T1, internal, 919, 985
-recovered snap_scaffold_745-snap.2-T1, internal, 4451, 4589

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 132, 234
Couldn't classify 4525, 4671
Sorry, prediction snap_scaffold_745-snap.1-T1 fails validation.
(GTA)	 AG	132-234	GT	GGG
(CTT)	 AG	397-493	GT	AAG
(GTT)	 AG	3081-3179	GT	ATG
(CCT)	 AG	3724-3853	GT	AGG
(ATC)	 AG	4525-4671	GT	AGG
-recovered snap_scaffold_745-snap.1-T1, internal, 132, 234
-recovered snap_scaffold_745-snap.1-T1, internal, 397, 493
-recovered snap_scaffold_745-snap.1-T1, internal, 3081, 3179
-recovered snap_scaffold_745-snap.1-T1, internal, 3724, 3853
-recovered snap_scaffold_745-snap.1-T1, internal, 4525, 4671
Couldn't classify 397, 493
Sorry, prediction GlimmerHMM_glimmerT_60687-T1 fails validation.
(CTT)	 AG	397-493	GT	AAG
(GTT)	 AG	3081-3179	GT	ATG
(CCT)	 AG	3724-3901	GC	GAG
-recovered GlimmerHMM_glimmerT_60687-T1, terminal, 3724, 3901
-recovered GlimmerHMM_glimmerT_60687-T1, internal, 397, 493
-recovered GlimmerHMM_glimmerT_60687-T1, internal, 3081, 3179
-recovered GlimmerHMM_glimmerT_60687-T1, internal, 3724, 3901
Couldn't classify 132, 234
Couldn't classify 4525, 4671
Sorry, prediction Augustus_model.g40174.t1 fails validation.
(GTA)	 AG	132-234	GT	GGG
(CTT)	 AG	397-493	GT	AAG
(GGA)	 AG	837-920	GT	AGG
(TTT)	 AG	1019-1087	GT	TCG
(GTT)	 AG	3081-3179	GT	ATG
(CCT)	 AG	3724-3853	GT	AGG
(ATC)	 AG	4525-4671	GT	AGG
-recovered Augustus_model.g40174.t1, internal, 132, 234
-recovered Augustus_model.g40174.t1, internal, 397, 493
-recovered Augustus_model.g40174.t1, internal, 837, 920
-recovered Augustus_model.g40174.t1, internal, 1019, 1087
-recovered Augustus_model.g40174.t1, internal, 3081, 3179
-recovered Augustus_model.g40174.t1, internal, 3724, 3853
-recovered Augustus_model.g40174.t1, internal, 4525, 4671

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4562, rend_intergenic: 919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4693
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4562, rend_intergenic: 919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support