-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_741

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60683-T1
Couldn't classify 4511, 4703
Sorry, prediction Augustus_model.g40170.t1 fails validation.
(ATG)	 GG	465-544	GT	AGG
(GTA)	 AG	783-845	GT	TTG
(ATT)	 AG	1658-1693	GT	AGG
(TGG)	 AG	2326-2484	GT	GTG
(AGA)	 AG	3387-3567	GT	CTG
(ATT)	 AG	4511-4703		CA
-recovered Augustus_model.g40170.t1, initial, 465, 544
add_exon() Sorry, Augustus_model.g40170.t1 1658-1693-terminal-1 is invalid.
-recovered Augustus_model.g40170.t1, terminal, 1658, 1693
-recovered Augustus_model.g40170.t1, internal, 783, 845
-recovered Augustus_model.g40170.t1, internal, 1658, 1693
-recovered Augustus_model.g40170.t1, internal, 2326, 2484
-recovered Augustus_model.g40170.t1, internal, 3387, 3567
Couldn't classify 4511, 4681
Sorry, prediction snap_scaffold_741-snap.1-T1 fails validation.
(ATG)	 CA	871-919	GT	CAG
(ATA)	 AG	1666-1693	GT	AGG
(TGG)	 AG	2326-2484	GT	GTG
(AGA)	 AG	3387-3567	GT	CTG
(ATT)	 AG	4511-4681	GT	ACG
-recovered snap_scaffold_741-snap.1-T1, initial, 871, 919
add_exon() Sorry, snap_scaffold_741-snap.1-T1 1666-1693-terminal-3 is invalid.
-recovered snap_scaffold_741-snap.1-T1, terminal, 1666, 1693
-recovered snap_scaffold_741-snap.1-T1, internal, 1666, 1693
-recovered snap_scaffold_741-snap.1-T1, internal, 2326, 2484
-recovered snap_scaffold_741-snap.1-T1, internal, 3387, 3567
-recovered snap_scaffold_741-snap.1-T1, internal, 4511, 4681
Couldn't classify 4511, 4609
Sorry, prediction GlimmerHMM_glimmerT_60684-T1 fails validation.
(ATG)	 CA	871-923	GT	GAG
(TGG)	 AG	2326-2484	GT	GTG
(AGA)	 AG	3387-3567	GT	CTG
(ATT)	 AG	4511-4609	GT	CTG
-recovered GlimmerHMM_glimmerT_60684-T1, initial, 871, 923
-recovered GlimmerHMM_glimmerT_60684-T1, internal, 2326, 2484
-recovered GlimmerHMM_glimmerT_60684-T1, internal, 3387, 3567
-recovered GlimmerHMM_glimmerT_60684-T1, internal, 4511, 4609
Couldn't classify 4511, 4702
Sorry, prediction pasa_asmbl_51644.p2 fails validation.
(ATG)	 GC	3406-3567	GT	CTG
(ATT)	 AG	4511-4702	A	CCA
-recovered pasa_asmbl_51644.p2, initial, 3406, 3567

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_741-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4681, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4703
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4681, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support